Cell type gene expression markers


This is a list of gene expression markers are used to define cell types. Green rows indicate canonical markers (classical markers used to define the cell type).

Summary: 8286 associations (178 cell types, 4679 gene symbols, 29 tissues); Last updated: 27/03/2020 10:44:00 CET

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Description: Bergmann glia are located in the cerebellum in which they can be seen very early in development, and play an essential role in the migration of the cerebellar Purkinje cells and granule cells. Bergmann glia are characterized by multiple radial branches, as opposed to a single process in other radial glia in other brain areas, that spans the width of the cerebellar cortex. Since Bergmann glia appear to persist in the cerebellum, and perform many of the roles characteristic of astrocytes, they have also been

Gene expression markers for Bergmann glia

Vote(s) Species Official gene symbol UI Sensitivity (human) Sensitivity (mouse) Specificity (human) Specificity (mouse) Marker count Cell type Germ layer Organ Aliases Product description Disease Action
2
Mm Hs FABP7 0.142 0 1 0.014 0.174 2 Bergmann glia Ectoderm Brain B-FABP,BLBP fatty acid binding protein 7 flag
1
Mm Hs NTSR2 0.019 0 0.333 0 0.024 2 Bergmann glia Ectoderm Brain NTR2 neurotensin receptor 2 flag
0
Mm Hs EGFR 0.014 0 0 0.022 0.013 8 Bergmann glia Ectoderm Brain ERBB1,ERBB epidermal growth factor receptor Yflag
0
Mm Hs TTC21B 0.001 0 0 0 0 1 Bergmann glia Ectoderm Brain FLJ11457,JBTS11,NPHP12,IFT139B,THM1 tetratricopeptide repeat domain 21B Yflag
0
Mm Hs HEPACAM 0.033 0 0.667 0 0.041 2 Bergmann glia Ectoderm Brain FLJ25530,hepaCAM,GLIALCAM hepatic and glial cell adhesion molecule Yflag
0
Mm Hs ZEB2 0.144 0 0 0.085 0 2 Bergmann glia Ectoderm Brain KIAA0569,ZFHX1B zinc finger E-box binding homeobox 2 Yflag
0
Mm Hs UFL1 0.003 0 0 0 0 1 Bergmann glia Ectoderm Brain NLBP,Maxer,RCAD,KIAA0776 UFM1 specific ligase 1 flag
0
Mm Hs NRXN3 0.093 0 0 0.008 0.115 1 Bergmann glia Ectoderm Brain KIAA0743,C14orf60 neurexin 3 flag
0
Mm Hs ATP7A 0.001 0 0 0 0.002 1 Bergmann glia Ectoderm Brain MNK ATPase copper transporting alpha Yflag
0
Mm Hs BICD2 0.014 0 0 0.009 0.016 1 Bergmann glia Ectoderm Brain KIAA0699 BICD cargo adaptor 2 Yflag
0
Mm Hs GJA1 0.1 0 1 0.063 0.107 4 Bergmann glia Ectoderm Brain CX43,ODOD,SDTY3,ODDD,GJAL gap junction protein alpha 1 Yflag
0
Mm Hs METRN 0.015 0 0 0.055 0 2 Bergmann glia Ectoderm Brain MGC2601,C16orf23 meteorin, glial cell differentiation regulator flag
0
Mm Hs VIM 0.427 0 0 0.591 0 5 Bergmann glia Ectoderm Brain vimentin Yflag
0
Mm Hs GRIA1 0.056 0 1 0.002 0.069 1 Bergmann glia Ectoderm Brain GluA1,GLURA,GLUR1 glutamate ionotropic receptor AMPA type subunit 1 flag
0
Mm Hs P2RY1 0.003 0 0 0.002 0.003 3 Bergmann glia Ectoderm Brain P2Y1,SARCC purinergic receptor P2Y1 flag
0
Mm Hs GRIN2B 0.076 0 0 0.005 0.095 2 Bergmann glia Ectoderm Brain GluN2B,NMDAR2B glutamate ionotropic receptor NMDA type subunit 2B Yflag
0
Mm Hs GRIN3A 0.006 0 0 0 0.008 1 Bergmann glia Ectoderm Brain GluN3A glutamate ionotropic receptor NMDA type subunit 3A flag
0
Mm Hs SEPT4 0.081 0 0 0.017 0 1 Bergmann glia Ectoderm Brain CE5B3,hucep-7,ARTS,hCDCREL-2,MART,PNUTL2 septin 4 flag
0
Mm Hs DAO 0.001 0 0 0 0.001 1 Bergmann glia Ectoderm Brain DAMOX,DAAO D-amino acid oxidase Yflag
0
Mm Hs ITGB1 0.276 0 0 0.169 0.302 4 Bergmann glia Ectoderm Brain CD29,GPIIA,FNRB,MSK12,MDF2 integrin subunit beta 1 flag
0
Mm Hs KIF1BP 0.023 0 0 0.007 0.028 2 Bergmann glia Ectoderm Brain DKFZP586B0923,TTC20,KBP,KIAA1279 KIF1 binding protein Yflag
0
Mm Hs S100B 0.066 0 0 0.033 0 8 Bergmann glia Ectoderm Brain S100beta S100 calcium binding protein B flag
0
Mm Hs GDF10 0.005 0 1 0 0.006 3 Bergmann glia Ectoderm Brain BMP-3b growth differentiation factor 10 flag
0
Mm Hs GJB6 0.013 0 0 0 0.016 2 Bergmann glia Ectoderm Brain EDH,CX30,ED2 gap junction protein beta 6 Yflag
0
Mm Hs GRIA4 0.014 0 1 0.003 0.016 3 Bergmann glia Ectoderm Brain GluA4,GLURD,GLUR4 glutamate ionotropic receptor AMPA type subunit 4 flag
0
Mm Hs GRM3 0.002 0 0 0.004 0.002 1 Bergmann glia Ectoderm Brain GPRC1C,mGlu3,MGLUR3 glutamate metabotropic receptor 3 flag
0
Mm Hs ITIH3 0.009 0 0.667 0.003 0.011 2 Bergmann glia Ectoderm Brain H3P inter-alpha-trypsin inhibitor heavy chain 3 flag
0
Mm Hs A2M 0.012 0 0.333 0.062 0.002 1 Bergmann glia Ectoderm Brain FWP007,S863-7,CPAMD5 alpha-2-macroglobulin Yflag
0
Mm Hs PTCH1 0.012 0 1 0.019 0.011 4 Bergmann glia Ectoderm Brain BCNS,NBCCS,PTCH patched 1 Yflag
0
Mm Hs CDC42EP4 0.027 0 1 0.018 0.03 1 Bergmann glia Ectoderm Brain KAIA1777,BORG4,MGC3740,MGC17125 CDC42 effector protein 4 flag
0
Mm Hs BTBD17 0.022 0 1 0.001 0.027 1 Bergmann glia Ectoderm Brain LGALS3BPL,BTBD17A,TANGO10A BTB domain containing 17 flag
0
Mm Hs AQP4 0.024 0 1 0.006 0.029 9 Bergmann glia Ectoderm Brain MIWC aquaporin 4 flag
0
Mm Hs SLC4A4 0.033 0 0 0.012 0 4 Bergmann glia Ectoderm Brain NBC1,HNBC1,NBC2,pNBC,hhNMC,SLC4A5 solute carrier family 4 member 4 Yflag
0
Mm Hs HOPX 0.033 0 1 0.092 0.022 10 Bergmann glia Ectoderm Brain LAGY,OB1,NECC1,SMAP31 HOP homeobox flag
0
Mm Hs GPR37L1 0.041 0 1 0.004 0.051 5 Bergmann glia Ectoderm Brain ETBR-LP-2 G protein-coupled receptor 37 like 1 flag
0
Mm Hs ACSBG1 0.023 0 1 0 0.028 3 Bergmann glia Ectoderm Brain BGM,FLJ30320,MGC14352,BG1,KIAA0631,hBG1,hsBG acyl-CoA synthetase bubblegum family member 1 flag
0
Mm Hs ALDH1L1 0.008 0 0 0.002 0.01 2 Bergmann glia Ectoderm Brain 10-fTHF,FTHFD aldehyde dehydrogenase 1 family member L1 flag
0
Mm Hs SLC1A3 0.074 0 0 0.011 0 6 Bergmann glia Ectoderm Brain EAAT1,GLAST,EA6 solute carrier family 1 member 3 Yflag
0
Mm Hs SLC1A2 0.071 0 0 0.011 0 3 Bergmann glia Ectoderm Brain GLT-1,EAAT2 solute carrier family 1 member 2 flag
0
Mm Hs GFAP 0.013 0 0 0.006 0.015 11 Bergmann glia Ectoderm Brain FLJ45472 glial fibrillary acidic protein Yflag
-1
Mm Hs P2RX7 0.004 0 0 0.009 0.003 8 Bergmann glia Ectoderm Brain P2X7,MGC20089 purinergic receptor P2X 7 flag

Datasets with computationally identified Bergmann glia

SRA SRS tissue cluster cell type p-value FDR View
SRA667466 SRS3059959 Cerebellum 1 Bergmann glia 7.84E-18 6.82E-15 view data
SRA667466 SRS3059983 Cerebellum 1 Bergmann glia 1.46E-13 1.14E-10 view data
SRA667466 SRS3059982 Cerebellum 1 Bergmann glia 2.35E-15 2.44E-12 view data