Publications in the scientific literature

This list contains 4598 papers covering various topics of single cell sequencing. It is compiled by searching for keywords in abstracts and titles using data from ftp://ftp.ncbi.nlm.nih.gov/pubmed/updatefiles/ and ftp://ftp.ncbi.nlm.nih.gov/pubmed/baseline/. It is automatically updated daily. Rows in blue indicate papers in "high impact" journals.

Added within the last 24h to this list.

The study is about computer software/algorithm/database/pure bioinformatics.

The study is about a new method.

The study is a review or comment.

The study does not involve mammalian scRNA-seq data or raw data are not public.

Include studies:

First author Journal Title Pub. date DOI Citations Action
Zhu Biosci Rep Comprehensive Analysis Reveals a Prognostic and Therapeutic Biomarker CD3D in the Breast Carcinoma Microenvironment. 2021-12-22 10.1042/BSR20202898 view
Galise Methods Mol Biol Guidelines for Setting Up a mRNA Sequencing Experiment and Best Practices for Bioinformatic Data Analysis. 2021-12-01 10.1007/978-1-0716-1201-9_10 view
Strzelecka Methods Mol Biol Single-Cell Transcriptomic Analysis of Hematopoietic Cells. 2021-11-01 10.1007/978-1-0716-0810-4_9 view
Alshetaiwi Methods Mol Biol Single-Cell Transcriptome Analysis Workflow for Splenic Myeloid-Derived Suppressor Cells from Murine Breast Cancer Models. 2021-11-01 10.1007/978-1-0716-1060-2_14 view
Mahfooz Methods Mol Biol Combining Whole-Cell Patch-Clamp Recordings with Single-Cell RNA Sequencing. 2021-10-01 10.1007/978-1-0716-0818-0_9 view
Debnath Methods Mol. Biol. Specimen Preparation for Single-Cell Sequencing Analysis of Skeletal Cells. 2021-09-01 10.1007/978-1-0716-0989-7_7 view
Yu Methods Mol. Biol. Statistical and Bioinformatics Analysis of Data from Bulk and Single-Cell RNA Sequencing Experiments. 2021-09-01 10.1007/978-1-0716-0849-4_9 view
Ferrall-Fairbanks Methods Mol. Biol. Investigating Inter- and Intrasample Diversity of Single-Cell RNA Sequencing Datasets. 2021-09-01 10.1007/978-1-0716-0849-4_10 view
Pinder Methods Mol. Biol. Use of Chlamydial Elementary Bodies as Probes to Isolate Pathogen-Specific Human Monoclonal Antibodies. 2021-09-01 10.1007/978-1-0716-0795-4_3 view
Massri Methods Mol. Biol. Methodologies for Following EMT In Vivo at Single Cell Resolution. 2021-09-01 10.1007/978-1-0716-0779-4_23 view
Khatun J Exp Med Single-cell lineage mapping of a diverse virus-specific naive CD4 T cell repertoire. 2021-03-01 10.1084/jem.20200650 view
Sticco FASEB J C1QL3 promotes cell-cell adhesion by mediating complex formation between ADGRB3/BAI3 and neuronal pentraxins. 2021-01-01 10.1096/fj.202000351RR view
Schneider Neurol Neuroimmunol Neuroinflamm Chitinase 3-like 1 and neurofilament light chain in CSF and CNS atrophy in MS. 2021-01-01 10.1212/NXI.0000000000000906 view
Sinclair J Heart Lung Transplant The autotaxin-lysophosphatidic acid pathway mediates mesenchymal cell recruitment and fibrotic contraction in lung transplant fibrosis. 2021-01-01 10.1016/j.healun.2020.10.005 view
Karlina Life Sci Alliance Identification and characterization of distinct brown adipocyte subtypes in C57BL/6J mice. 2021-01-01 10.26508/lsa.202000924 view
Lähde Gastroenterology Expression of R-Spondin 1 in ApcMin/+ Mice Suppresses Growth of Intestinal Adenomas by Altering Wnt and Transforming Growth Factor Beta Signaling. 2021-01-01 10.1053/j.gastro.2020.09.011 view
Rodriguez-Fraticelli Curr Opin Hematol Systems analysis of hematopoiesis using single-cell lineage tracing. 2021-01-01 10.1097/MOH.0000000000000624 view
Boufea Life Sci Alliance Single-cell RNA sequencing of human breast tumour-infiltrating immune cells reveals a γδ T-cell subtype associated with good clinical outcome. 2021-01-01 10.26508/lsa.202000680 view
Cohen Life Sci Alliance Meningeal lymphoid structures are activated under acute and chronic spinal cord pathologies. 2021-01-01 10.26508/lsa.202000907 view
Tan Medicine (Baltimore) Study on the clinical mechanism of Tong-Xie-An-Chang Decoction in the treatment of diarrheal irritable bowel syndrome based on single-cell sequencing technology. 2020-12-24 10.1097/MD.0000000000023868 view
Yeung Blood Adv Lung megakaryocytes display distinct transcriptional and phenotypic properties. 2020-12-22 10.1182/bloodadvances.2020002843 view
Cheng Brief Bioinform Inferring microenvironmental regulation of gene expression from single-cell RNA sequencing data using scMLnet with an application to COVID-19. 2020-12-21 10.1093/bib/bbaa327 view
Chen Nat Biotechnol A multicenter study benchmarking single-cell RNA sequencing technologies using reference samples. 2020-12-21 10.1038/s41587-020-00748-9 view
Bottes Nat Neurosci Long-term self-renewing stem cells in the adult mouse hippocampus identified by intravital imaging. 2020-12-21 10.1038/s41593-020-00759-4 view
Hauser iScience Generation of a Single-Cell RNAseq Atlas of Murine Salivary Gland Development. 2020-12-18 10.1016/j.isci.2020.101838 view
Fodoulian iScience SARS-CoV-2 Receptors and Entry Genes Are Expressed in the Human Olfactory Neuroepithelium and Brain. 2020-12-18 10.1016/j.isci.2020.101839 view
Diaz Soria Nat Commun Single-cell atlas of the first intra-mammalian developmental stage of the human parasite Schistosoma mansoni. 2020-12-18 10.1038/s41467-020-20092-5 view
Wu Nat Commun Glioblastoma epigenome profiling identifies SOX10 as a master regulator of molecular tumour subtype. 2020-12-18 10.1038/s41467-020-20225-w view
Rabhi iScience Shifts of Immune Cell Populations Differ in Response to Different Effectors of Beige Remodeling of Adipose Tissue. 2020-12-18 10.1016/j.isci.2020.101765 view
Tatsuoka iScience Single-Cell Transcriptome Analysis Dissects the Replicating Process of Pancreatic Beta Cells in Partial Pancreatectomy Model. 2020-12-18 10.1016/j.isci.2020.101774 view
Loe Trends Cell Biol Mesenchymal Niches for Digestive Organ Development, Homeostasis, and Disease. 2020-12-18 10.1016/j.tcb.2020.11.010 view
Balança JCI Insight PD-1 blockade restores helper activity of tumor-infiltrating exhausted PD-1hiCD39+ CD4 T cells. 2020-12-17 10.1172/jci.insight.142513 view
Guo Cell Prolif Systemic transcriptome comparison between early- And late-onset pre-eclampsia shows distinct pathology and novel biomarkers. 2020-12-17 10.1111/cpr.12968 view
Kuchina Science Microbial single-cell RNA sequencing by split-pool barcoding. 2020-12-17 10.1126/science.aba5257 view
Iqbal Arterioscler Thromb Vasc Biol Harnessing Single-Cell RNA Sequencing to Better Understand How Diseased Cells Behave the Way They Do in Cardiovascular Disease. 2020-12-17 10.1161/ATVBAHA.120.314776 view
Becker J Crohns Colitis Cannabinoid receptor activation on hematopoietic cells and enterocytes protects against colitis. 2020-12-17 10.1093/ecco-jcc/jjaa253 view
Reichardt Cell Signal Controlling cardiac fibrosis through fibroblast state space modulation. 2020-12-16 10.1016/j.cellsig.2020.109888 view
Su Cell Mol Gastroenterol Hepatol Single-cell transcriptomics reveals zone-specific alterations of liver sinusoidal endothelial cells in cirrhosis. 2020-12-16 10.1016/j.jcmgh.2020.12.007 view
Xiao BMC Bioinformatics NDRindex: a method for the quality assessment of single-cell RNA-Seq preprocessing data. 2020-12-16 10.1186/s12859-020-03883-x view
Chen BMC Genomics Using DenseFly algorithm for cell searching on massive scRNA-seq datasets. 2020-12-16 10.1186/s12864-020-6651-8 view
Wang Cancer Discov CRISPR Screening of CAR T Cells and Cancer Stem Cells Reveals Critical Dependencies for Cell-Based Therapies. 2020-12-16 10.1158/2159-8290.CD-20-1243 view
Dong Commun Biol Single-cell analysis supports a luminal-neuroendocrine transdifferentiation in human prostate cancer. 2020-12-16 10.1038/s42003-020-01476-1 view
Zhu Cancers (Basel) GAS2L1 Is a Potential Biomarker of Circulating Tumor Cells in Pancreatic Cancer. 2020-12-15 10.3390/cancers12123774 view
Kott J Am Heart Assoc Single-Cell Immune Profiling in Coronary Artery Disease: The Role of State-of-the-Art Immunophenotyping With Mass Cytometry in the Diagnosis of Atherosclerosis. 2020-12-15 10.1161/JAHA.120.017759 view
Zhang Brief Bioinform Goals and approaches for each processing step for single-cell RNA sequencing data. 2020-12-15 10.1093/bib/bbaa314 view
Bruton J Allergy Clin Immunol Interrupting reactivation of immunological memory diverts the allergic response and prevents anaphylaxis. 2020-12-15 10.1016/j.jaci.2020.11.042 view
Wang Osteoarthritis Cartilage Novel biomarkers of intervertebral disc cells and evidence of stem cells in the intervertebral disc. 2020-12-15 10.1016/j.joca.2020.12.005 view
Chovatiya Exp Dermatol High resolution single cell transcriptomics reveals heterogeneity of self-renewing hair follicle stem cells. 2020-12-15 10.1111/exd.14262 view
Sanders Gigascience Identification of a differentiation stall in epithelial mesenchymal transition in histone H3-mutant diffuse midline glioma. 2020-12-15 10.1093/gigascience/giaa136 view
Chen JCI Insight A roadmap from single-cell transcriptome to patient classification for the immune response to trauma. 2020-12-15 10.1172/jci.insight.145108 view
Okuda Am J Respir Crit Care Med Secretory Cells Dominate Airway CFTR Expression and Function in Human Airway Superficial Epithelia. 2020-12-15 10.1164/rccm.202008-3198OC view
Cleveland Immunity Resolving the Instructions for αβ T Cell Development. 2020-12-15 10.1016/j.immuni.2020.11.014 view
Uchimura Cell Rep Human Pluripotent Stem Cell-Derived Kidney Organoids with Improved Collecting Duct Maturation and Injury Modeling. 2020-12-15 10.1016/j.celrep.2020.108514 view
Andueza Cell Rep Endothelial Reprogramming by Disturbed Flow Revealed by Single-Cell RNA and Chromatin Accessibility Study. 2020-12-15 10.1016/j.celrep.2020.108491 view
Zheng Brief Bioinform ColorCells: a database of expression, classification and functions of lncRNAs in single cells. 2020-12-14 10.1093/bib/bbaa325 view
Oliva-Olivera Metabolism Human adipose tissue-derived stem cell paracrine networks vary according metabolic risk and after TNFα-induced death: an analysis at the single-cell level. 2020-12-14 10.1016/j.metabol.2020.154466 view
Sun J Invest Dermatol Ovol1 regulates psoriasis-like skin inflammation and epidermal hyperplasia. 2020-12-14 10.1016/j.jid.2020.10.025 view
Lu Gene Single-cell profiles of human bone marrow-derived mesenchymal stromal cells after IFN-γ and TNF-α licensing. 2020-12-14 10.1016/j.gene.2020.145347 view
Yu Development Loss of ESRP1 blocks mouse oocyte development and leads to female infertility. 2020-12-14 10.1242/dev.196931 view
Satterlee Proc Natl Acad Sci U S A Plant stem-cell organization and differentiation at single-cell resolution. 2020-12-14 10.1073/pnas.2018788117 view
Liu Proc Natl Acad Sci U S A Human embryonic stem cell-derived organoid retinoblastoma reveals a cancerous origin. 2020-12-14 10.1073/pnas.2011780117 view
Kim J Immunol Ubiquitination of MHC Class II by March-I Regulates Dendritic Cell Fitness. 2020-12-14 10.4049/jimmunol.2000975 view
Li Sci Rep Olfactomedin 4 mediation of prostate stem/progenitor-like cell proliferation and differentiation via MYC. 2020-12-14 10.1038/s41598-020-78774-5 view
McAndrews Cancer Cell Stromal Cells Exhibit Prevalent Genetic Aberrations in Colorectal Cancer. 2020-12-14 10.1016/j.ccell.2020.11.003 view
Ferrarini Cancers (Basel) The Evolving Knowledge on T and NK Cells in Classic Hodgkin Lymphoma: Insights into Novel Subsets Populating the Immune Microenvironment. 2020-12-14 10.3390/cancers12123757 view
Wang J Gastrointestin Liver Dis Elevated TUBA1A Might Indicate the Clinical Outcomes of Patients with Gastric Cancer, Being Associated with the Infiltration of Macrophages in the Tumor Immune Microenvironment. 2020-12-12 10.15403/jgld-2834 view
Veenvliet Science Mouse embryonic stem cells self-organize into trunk-like structures with neural tube and somites. 2020-12-11 10.1126/science.aba4937 view
Zheng Nat Protoc A microfluidics-based stem cell model of early post-implantation human development. 2020-12-11 10.1038/s41596-020-00417-w view
Osorio Patterns (N Y) scTenifoldNet: A Machine Learning Workflow for Constructing and Comparing Transcriptome-wide Gene Regulatory Networks from Single-Cell Data. 2020-12-11 10.1016/j.patter.2020.100139 view
Xi Cell Syst Benchmarking Computational Doublet-Detection Methods for Single-Cell RNA Sequencing Data. 2020-12-11 10.1016/j.cels.2020.11.008 view
Lui Cell Differential encoding in prefrontal cortex projection neuron classes across cognitive tasks. 2020-12-11 10.1016/j.cell.2020.11.046 view
Pacocha Anal Chem High-Throughput Monitoring of Bacterial Cell Density in Nanoliter Droplets: Label-Free Detection of Unmodified Gram-Positive and Gram-Negative Bacteria. 2020-12-10 10.1021/acs.analchem.0c03408 view
Simon Gigascience DrivAER: Identification of driving transcriptional programs in single-cell RNA sequencing data. 2020-12-10 10.1093/gigascience/giaa122 view
Wang Mol Oncol Circulating tumor cell detection and single-cell analysis using an integrated workflow based on ChimeraX® -i120 Platform: A prospective study. 2020-12-10 10.1002/1878-0261.12876 view
Zhou J Hematol Oncol Trajectory of chemical cocktail-induced neutrophil reprogramming. 2020-12-10 10.1186/s13045-020-01008-8 view
Lelliott Cancer Immunol Res Combined BRAF, MEK and CDK4/6 inhibition depletes intratumoral immune-potentiating myeloid populations in melanoma. 2020-12-10 10.1158/2326-6066.CIR-20-0401 view
Song Nucleic Acids Res Entropy subspace separation-based clustering for noise reduction (ENCORE) of scRNA-seq data. 2020-12-10 10.1093/nar/gkaa1157 view
Miura Biochem Biophys Res Commun Contribution of PDGFRα lineage cells in adult mouse hematopoiesis. 2020-12-10 10.1016/j.bbrc.2020.11.114 view
Huang Cell Lymph nodes are innervated by a unique population of sensory neurons with immunomodulatory potential. 2020-12-10 10.1016/j.cell.2020.11.028 view
Varma Curr Opin Organ Transplant Dissecting the human kidney allograft transcriptome: single-cell RNA sequencing. 2020-12-10 10.1097/MOT.0000000000000840 view
Yu Brief Bioinform scGMAI: a Gaussian mixture model for clustering single-cell RNA-Seq data based on deep autoencoder. 2020-12-10 10.1093/bib/bbaa316 view
Liu J Allergy Clin Immunol Single cell RNA-seq of psoriatic skin identifies pathogenic Tc17 subsets and reveals distinctions between CD8+ T cells in autoimmunity and cancer. 2020-12-09 10.1016/j.jaci.2020.11.028 view
Wang Cell Stem Cell Decoding Human Megakaryocyte Development. 2020-12-09 10.1016/j.stem.2020.11.006 view
Ahlmann-Eltze Bioinformatics glmGamPoi: Fitting Gamma-Poisson Generalized Linear Models on Single Cell Count Data. 2020-12-09 10.1093/bioinformatics/btaa1009 view
Maschmeyer Eur J Immunol Antigen-driven PD-1+ TOX+ BHLHE40+ and PD-1+ TOX+ EOMES+ T lymphocytes regulate juvenile idiopathic arthritis in situ. 2020-12-09 10.1002/eji.202048797 view
Ciccolella BMC Bioinformatics gpps: an ILP-based approach for inferring cancer progression with mutation losses from single cell data. 2020-12-09 10.1186/s12859-020-03736-7 view
Yap Nature Bidirectional perisomatic inhibitory plasticity of a Fos neuronal network. 2020-12-09 10.1038/s41586-020-3031-0 view
Huang Cell Prolif Single-cell RNA sequencing reveals heterogeneity and differential expression of decidual tissues during the peripartum period. 2020-12-09 10.1111/cpr.12967 view
Lidgerwood Genomics Proteomics Bioinformatics Transcriptomic Profiling of Human Pluripotent Stem Cell-derived Retinal Pigment Epithelium over Time. 2020-12-08 10.1016/j.gpb.2020.08.002 view
Vans Brief Bioinform FEATS: feature selection-based clustering of single-cell RNA-seq data. 2020-12-08 10.1093/bib/bbaa306 view
Redente JCI Insight Loss of Fas-signaling in fibroblasts impairs homeostatic fibrosis resolution and promotes persistent pulmonary fibrosis. 2020-12-08 10.1172/jci.insight.141618 view
Konstantinides Development Neuronal differentiation strategies: insights from single-cell sequencing and machine learning. 2020-12-08 10.1242/dev.193631 view
Nishiwaki mSystems Short-Chain Fatty Acid-Producing Gut Microbiota Is Decreased in Parkinson's Disease but Not in Rapid-Eye-Movement Sleep Behavior Disorder. 2020-12-08 10.1128/mSystems.00797-20 view
Wang Cell Rep Cell-Type-Specific Gene Regulatory Networks Underlying Murine Neonatal Heart Regeneration at Single-Cell Resolution. 2020-12-08 10.1016/j.celrep.2020.108472 view
Song Cell Discov Global immune characterization of HBV/HCV-related hepatocellular carcinoma identifies macrophage and T-cell subsets associated with disease progression. 2020-12-08 10.1038/s41421-020-00214-5 view
Zeng Brief Bioinform Coupled co-clustering-based unsupervised transfer learning for the integrative analysis of single-cell genomic data. 2020-12-07 10.1093/bib/bbaa347 view
Harsha Krovi Nat Commun Thymic iNKT single cell analyses unmask the common developmental program of mouse innate T cells. 2020-12-07 10.1038/s41467-020-20073-8 view
Stickels Nat Biotechnol Highly sensitive spatial transcriptomics at near-cellular resolution with Slide-seqV2. 2020-12-07 10.1038/s41587-020-0739-1 view
Morarach Nat Neurosci Diversification of molecularly defined myenteric neuron classes revealed by single-cell RNA sequencing. 2020-12-07 10.1038/s41593-020-00736-x view
Andrews Nat Protoc Tutorial: guidelines for the computational analysis of single-cell RNA sequencing data. 2020-12-07 10.1038/s41596-020-00409-w view
Lee Exp Dermatol Stem Cell Intrinsic Mechanisms Regulating Adult Hair Follicle Homeostasis. 2020-12-05 10.1111/exd.14251 view
Wang J Allergy Clin Immunol Treatment of granuloma annulare and suppression of proinflammatory cytokine activity with tofacitinib. 2020-12-05 10.1016/j.jaci.2020.10.012 view
Gohil Nat Rev Clin Oncol Applying high-dimensional single-cell technologies to the analysis of cancer immunotherapy. 2020-12-04 10.1038/s41571-020-00449-x view
Kim Cell A Molecular Calcium Integrator Reveals a Striatal Cell Type Driving Aversion. 2020-12-04 10.1016/j.cell.2020.11.015 view
Yamazaki Neuron Vascular ApoE4 Impairs Behavior by Modulating Gliovascular Function. 2020-12-04 10.1016/j.neuron.2020.11.019 view
Peng Cancers (Basel) Single-Cell RNA Sequencing of a Postmenopausal Normal Breast Tissue Identifies Multiple Cell Types That Contribute to Breast Cancer. 2020-12-04 10.3390/cancers12123639 view
Ramaswamy medRxiv Post-infectious inflammatory disease in MIS-C features elevated cytotoxicity signatures and autoreactivity that correlates with severity. 2020-12-04 10.1101/2020.12.01.20241364 view
Liu Cereb Cortex Prefrontal Granule Cell-Related Genes and Schizophrenia. 2020-12-04 10.1093/cercor/bhaa360 view
Johnsson Clin Rheumatol Synovial biopsies in clinical practice and research: current developments and perspectives. 2020-12-04 10.1007/s10067-020-05512-7 view
Harman Stem Cell Res Ther Single-cell RNA sequencing of equine mesenchymal stromal cells from primary donor-matched tissue sources reveals functional heterogeneity in immune modulation and cell motility. 2020-12-04 10.1186/s13287-020-02043-5 view
Schulert Ann Rheum Dis Monocyte and bone marrow macrophage transcriptional phenotypes in systemic juvenile idiopathic arthritis reveal TRIM8 as a mediator of IFN-γ hyper-responsiveness and risk for macrophage activation syndrome. 2020-12-04 10.1136/annrheumdis-2020-217470 view
Eum Exp Mol Med Tumor-promoting macrophages prevail in malignant ascites of advanced gastric cancer. 2020-12-04 10.1038/s12276-020-00538-y view
Stumpf Commun Biol Transfer learning efficiently maps bone marrow cell types from mouse to human using single-cell RNA sequencing. 2020-12-04 10.1038/s42003-020-01463-6 view
Winkels Arterioscler Thromb Vasc Biol Heterogeneity of T Cells in Atherosclerosis Defined by Single-Cell RNA-Sequencing and Cytometry by Time of Flight. 2020-12-03 10.1161/ATVBAHA.120.312137 view
Wang Anal Chem Single-Cell Sequencing-Enabled Hexokinase 2 Assay for Noninvasive Bladder Cancer Diagnosis and Screening by Detecting Rare Malignant Cells in Urine. 2020-12-03 10.1021/acs.analchem.0c04282 view
Patir Sci Rep Single-cell RNA-seq reveals CD16- monocytes as key regulators of human monocyte transcriptional response to Toxoplasma. 2020-12-03 10.1038/s41598-020-78250-0 view
Zhang J Pineal Res Melatonin improves the effect of cryopreservation on human oocytes by suppressing oxidative stress and maintaining the permeability of the oolemma. 2020-12-03 10.1111/jpi.12707 view
Lei Int J Infect Dis Single-cell RNA-Seq revealed profound immune alteration in the peripheral blood of patients with bacterial infection. 2020-12-02 10.1016/j.ijid.2020.11.205 view
Ni Biochem Biophys Res Commun Single-cell analysis reveals the purification and maturation effects of glucose starvation in hiPSC-CMs. 2020-12-02 10.1016/j.bbrc.2020.11.076 view
Kalinski Elife Analysis of the immune response to sciatic nerve injury identifies efferocytosis as a key mechanism of nerve debridement. 2020-12-02 10.7554/eLife.60223 view
Hahn Nucleic Acids Res CoolMPS for robust sequencing of single-nuclear RNAs captured by droplet-based method. 2020-12-02 10.1093/nar/gkaa1127 view
Govaere Sci Transl Med Transcriptomic profiling across the nonalcoholic fatty liver disease spectrum reveals gene signatures for steatohepatitis and fibrosis. 2020-12-02 10.1126/scitranslmed.aba4448 view
Dhillon Cell Metab The Nuclear Receptor ESRRA Protects from Kidney Disease by Coupling Metabolism and Differentiation. 2020-12-01 10.1016/j.cmet.2020.11.011 view
Yin Adv Sci (Weinh) Atlas of Musculoskeletal Stem Cells with the Soft and Hard Tissue Differentiation Architecture. 2020-12-01 10.1002/advs.202000938 view
Dharmat Methods Mol. Biol. Single-Cell Capture, RNA-seq, and Transcriptome Analysis from the Neural Retina. 2020-12-01 10.1007/978-1-0716-0175-4_12 view
Hu NAR Genom Bioinform SIMPLEs: a single-cell RNA sequencing imputation strategy preserving gene modules and cell clusters variation. 2020-12-01 10.1093/nargab/lqaa077 view
Wu Front Oncol Single-Cell Sequencing of Glioblastoma Reveals Central Nervous System Susceptibility to SARS-CoV-2. 2020-12-01 10.3389/fonc.2020.566599 view
Massalha Mol Syst Biol A single cell atlas of the human liver tumor microenvironment. 2020-12-01 10.15252/msb.20209682 view
Choo Front Physiol Boolean Feedforward Neural Network Modeling of Molecular Regulatory Networks for Cellular State Conversion. 2020-12-01 10.3389/fphys.2020.594151 view
Li Front Cell Dev Biol Exploring Additional Valuable Information From Single-Cell RNA-Seq Data. 2020-12-01 10.3389/fcell.2020.593007 view
Thibivilliers Curr Protoc Plant Biol Isolation of Plant Root Nuclei for Single Cell RNA Sequencing. 2020-12-01 10.1002/cppb.20120 view
Xie Front Immunol The Expression Pattern and Clinical Significance of the Immune Checkpoint Regulator VISTA in Human Breast Cancer. 2020-12-01 10.3389/fimmu.2020.563044 view
Davis Hypertension Downregulation of M Current Is Coupled to Membrane Excitability in Sympathetic Neurons Before the Onset of Hypertension. 2020-12-01 10.1161/HYPERTENSIONAHA.120.15922 view
Sorokin Front Immunol Role of Vascular Smooth Muscle Cell Plasticity and Interactions in Vessel Wall Inflammation. 2020-12-01 10.3389/fimmu.2020.599415 view
Wan Front Oncol Discovery and Validation of a Metastasis-Related Prognostic and Diagnostic Biomarker for Melanoma Based on Single Cell and Gene Expression Datasets. 2020-12-01 10.3389/fonc.2020.585980 view
Elmentaite Dev Cell Single-Cell Sequencing of Developing Human Gut Reveals Transcriptional Links to Childhood Crohn's Disease. 2020-12-01 10.1016/j.devcel.2020.11.010 view
Krstevski Biochem Soc Trans New perspectives of the cardiac cellular landscape: mapping cellular mediators of cardiac fibrosis using single-cell transcriptomics. 2020-12-01 10.1042/BST20191255 view
Fleischer Front Physiol Vascular Heterogeneity With a Special Focus on the Hepatic Microenvironment. 2020-12-01 10.3389/fphys.2020.591901 view
Wu PLoS One In silico immune infiltration profiling combined with functional enrichment analysis reveals a potential role for naïve B cells as a trigger for severe immune responses in the lungs of COVID-19 patients. 2020-12-01 10.1371/journal.pone.0242900 view
Zhu Cell Discov Characterization and generation of human definitive multipotent hematopoietic stem/progenitor cells. 2020-12-01 10.1038/s41421-020-00213-6 view
Kelkka Front Immunol Adult-Onset Anti-Citrullinated Peptide Antibody-Negative Destructive Rheumatoid Arthritis Is Characterized by a Disease-Specific CD8+ T Lymphocyte Signature. 2020-12-01 10.3389/fimmu.2020.578848 view
Chang Front Immunol Redox Regulator GLRX Is Associated With Tumor Immunity in Glioma. 2020-12-01 10.3389/fimmu.2020.580934 view
Smith Front Immunol A Conserved TCRβ Signature Dominates a Highly Polyclonal T-Cell Expansion During the Acute Phase of a Murine Malaria Infection. 2020-12-01 10.3389/fimmu.2020.587756 view
Guo Front Genet Applications of Single-Cell Omics to Dissect Tumor Microenvironment. 2020-12-01 10.3389/fgene.2020.548719 view
Wang Front Genet Integrative Analysis Extracts a Core ceRNA Network of the Fetal Hippocampus With Down Syndrome. 2020-12-01 10.3389/fgene.2020.565955 view
Zhu Front Genet EC-PGMGR: Ensemble Clustering Based on Probability Graphical Model With Graph Regularization for Single-Cell RNA-seq Data. 2020-12-01 10.3389/fgene.2020.572242 view
Pak Front Cell Dev Biol Analyses of Avascular Mutants Reveal Unique Transcriptomic Signature of Non-conventional Endothelial Cells. 2020-12-01 10.3389/fcell.2020.589717 view
Gustafsson PLoS One DSAVE: Detection of misclassified cells in single-cell RNA-Seq data. 2020-12-01 10.1371/journal.pone.0243360 view
Soto Reproduction Similarities between bovine and human germline development revealed by single-cell RNAseq. 2020-12-01 10.1530/REP-20-0313 view
Tsyvina PLoS Comput Biol Inference of mutability landscapes of tumors from single cell sequencing data. 2020-11-30 10.1371/journal.pcbi.1008454 view
Godot PLoS Pathog TLR-9 agonist and CD40-targeting vaccination induces HIV-1 envelope-specific B cells with a diversified immunoglobulin repertoire in humanized mice. 2020-11-30 10.1371/journal.ppat.1009025 view
Bharat Sci Transl Med Lung transplantation for patients with severe COVID-19. 2020-11-30 10.1126/scitranslmed.abe4282 view
Olah Nat Commun Single cell RNA sequencing of human microglia uncovers a subset associated with Alzheimer's disease. 2020-11-30 10.1038/s41467-020-19737-2 view
Crowell Nat Commun muscat detects subpopulation-specific state transitions from multi-sample multi-condition single-cell transcriptomics data. 2020-11-30 10.1038/s41467-020-19894-4 view
Velazquez Cell Syst Gene Regulatory Network Analysis and Engineering Directs Development and Vascularization of Multilineage Human Liver Organoids. 2020-11-30 10.1016/j.cels.2020.11.002 view
Svensson Database (Oxford) A curated database reveals trends in single-cell transcriptomics. 2020-11-28 10.1093/database/baaa073 view
Jin Science In vivo Perturb-Seq reveals neuronal and glial abnormalities associated with autism risk genes. 2020-11-27 10.1126/science.aaz6063 view
Teschendorff Bioinformatics Ultra-fast scalable estimation of single-cell differentiation potency from scRNA-Seq data. 2020-11-27 10.1093/bioinformatics/btaa987 view
Xu J Cachexia Sarcopenia Muscle Single-cell RNA sequencing and lipidomics reveal cell and lipid dynamics of fat infiltration in skeletal muscle. 2020-11-27 10.1002/jcsm.12643 view
Dabouz J Neuroinflammation An allosteric interleukin-1 receptor modulator mitigates inflammation and photoreceptor toxicity in a model of retinal degeneration. 2020-11-27 10.1186/s12974-020-02032-8 view
Perally Int J Parasitol Schistosoma mansoni venom allergen-like protein 6 (SmVAL6) maintains tegumental barrier function. 2020-11-27 10.1016/j.ijpara.2020.09.004 view
Pak Biochem Biophys Res Commun Pax9 is essential for granulopoiesis but dispensable for erythropoiesis in zebrafish. 2020-11-27 10.1016/j.bbrc.2020.11.077 view
Kanagaki Stem Cells Directed induction of alveolar type I cells derived from pluripotent stem cells via Wnt signaling inhibition. 2020-11-26 10.1002/stem.3302 view
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