Cell type gene expression markers


This is a list of gene expression markers are used to define cell types. Green rows indicate canonical markers (classical markers used to define the cell type).

Summary: 8286 associations (178 cell types, 4679 gene symbols, 29 tissues); Last updated: 27/03/2020 10:44:00 CET

Filter

get tsv file add marker
Description: Cells which has secreted the matrix of cartilage and become embedded in it.

Gene expression markers for Chondrocytes

Vote(s) Species Official gene symbol UI Sensitivity (human) Sensitivity (mouse) Specificity (human) Specificity (mouse) Marker count Cell type Germ layer Organ Aliases Product description Disease Action
2
Mm Hs COL2A1 0.009 0 0.967 0.012 0.005 2 Chondrocytes Mesoderm Connective tissue STL1,SEDC,AOM collagen type II alpha 1 chain Yflag
1
Mm Hs MGP 0.082 0 1 0.117 0.071 4 Chondrocytes Mesoderm Connective tissue matrix Gla protein Yflag
0
Mm Hs DLK1 0.055 0 0.533 0.046 0.057 5 Chondrocytes Mesoderm Connective tissue FA1,pG2,Pref-1,ZOG,Delta1 delta like non-canonical Notch ligand 1 flag
0
Mm Hs EMP1 0.076 0 0.767 0.113 0.068 2 Chondrocytes Mesoderm Connective tissue TMP,CL-20 epithelial membrane protein 1 flag
0
Mm Hs CYTL1 0.012 0 0.933 0.028 0.006 3 Chondrocytes Mesoderm Connective tissue C17,C4orf4 cytokine like 1 flag
0
Mm Hs LCN2 0.043 0 0.067 0.057 0.042 9 Chondrocytes Mesoderm Connective tissue NGAL,24p3 lipocalin 2 flag
0
AC159092.1 0.031 0 0.833 0 0.037 1 Chondrocytes Mesoderm Connective tissue flag
0
Mm Hs LUM 0.051 0 0.667 0.087 0.042 4 Chondrocytes Mesoderm Connective tissue SLRR2D,LDC lumican flag
0
Mm Hs GADD45B 0.108 0 0.767 0.194 0.09 2 Chondrocytes Mesoderm Connective tissue GADD45BETA,DKFZP566B133,MYD118 growth arrest and DNA damage inducible beta flag
0
Mm Hs SCRG1 0.037 0 0 0.017 0 2 Chondrocytes Mesoderm Connective tissue SCRG-1 stimulator of chondrogenesis 1 flag
0
Mm Hs HAPLN1 0.009 0 0.967 0.026 0.003 1 Chondrocytes Mesoderm Connective tissue CRTL1 hyaluronan and proteoglycan link protein 1 flag
0
Mm Hs COL11A1 0.009 0 1 0.01 0.007 3 Chondrocytes Mesoderm Connective tissue STL2,CO11A1,COLL6 collagen type XI alpha 1 chain Yflag
0
Mm Hs S100A9 0.061 0 0 0.103 0 11 Chondrocytes Mesoderm Connective tissue MIF,NIF,LIAG,MRP14,MAC387,CGLB,CAGB S100 calcium binding protein A9 flag
0
Mm Hs CHAD 0.002 0 0.833 0 0.001 1 Chondrocytes Mesoderm Connective tissue SLRR4A chondroadherin flag
0
Mm Hs COL9A3 0.019 0 0.933 0.013 0.018 1 Chondrocytes Mesoderm Connective tissue EDM3,FLJ90759,DJ885L7.4.1 collagen type IX alpha 3 chain Yflag
0
Mm Hs SDC3 0.007 0 0 0.001 0 1 Chondrocytes Mesoderm Connective tissue N-syndecan,SYND3 syndecan 3 Yflag
0
Mm Hs S100A8 0.064 0 0 0.08 0 12 Chondrocytes Mesoderm Connective tissue P8,CGLA,CAGA S100 calcium binding protein A8 flag
0
Mm Hs CHODL 0.004 0 0 0.001 0.004 3 Chondrocytes Mesoderm Connective tissue FLJ12627,PRED12,MT75,C21orf68 chondrolectin flag
0
Mm Hs ATF4 0.35 0 0.9 0.385 0.338 1 Chondrocytes Mesoderm Connective tissue TAXREB67,CREB-2,TXREB activating transcription factor 4 flag
0
Hs SHOX 0 NA NA NA NA 1 Chondrocytes Mesoderm Connective tissue PHOG,GCFX,SHOXY short stature homeobox Yflag
0
Mm Hs TCF4 0.394 0 0 0.169 0 3 Chondrocytes Mesoderm Connective tissue SEF2-1B,ITF2,bHLHb19,E2-2 transcription factor 4 Yflag
0
Mm Hs VDR 0.011 0 0 0.003 0 8 Chondrocytes Mesoderm Connective tissue NR1I1,PPP1R163 vitamin D receptor Yflag
0
Mm Hs ATRX 0.408 0 0.033 0.21 0.454 1 Chondrocytes Mesoderm Connective tissue XH2,XNP,RAD54,JMS,MRX52 ATRX, chromatin remodeler Yflag
0
Mm Hs NOG 0.002 0 0 0.005 0.001 2 Chondrocytes Mesoderm Connective tissue SYNS1 noggin Yflag
0
Mm Hs AGER 0.011 0 0 0.001 0.014 6 Chondrocytes Mesoderm Connective tissue SCARJ1 advanced glycosylation end-product specific receptor flag
0
Mm Hs IL10RA 0.011 0 0 0.008 0.012 2 Chondrocytes Mesoderm Connective tissue HIL-10R,CDW210A,CD210a,CD210,IL10R interleukin 10 receptor subunit alpha Yflag
0
Mm Hs GLI3 0.003 0 0 0.006 0.002 2 Chondrocytes Mesoderm Connective tissue PAP-A,PAPA1,PAPB,ACLS,PPDIV,GCPS,PHS GLI family zinc finger 3 Yflag
0
Mm Hs TNC 0.033 0 0 0.013 0 2 Chondrocytes Mesoderm Connective tissue MGC167029,HXB,DFNA56 tenascin C Yflag
0
Mm Hs CRTAC1 0.005 0 0 0.001 0.007 1 Chondrocytes Mesoderm Connective tissue FLJ10320,CEP-68,ASPIC1 cartilage acidic protein 1 flag
0
Mm Hs CREB3L2 0.025 0 0.167 0.024 0.023 1 Chondrocytes Mesoderm Connective tissue BBF2H7,TCAG_1951439 cAMP responsive element binding protein 3 like 2 flag
0
Mm Hs RUNX2 0.008 0 0 0.009 0 3 Chondrocytes Mesoderm Connective tissue AML3,PEBP2A1,PEBP2aA1,CCD,CBFA1,CCD1 runt related transcription factor 2 Yflag
0
Mm Hs ACAN 0.002 0 0.767 0 0 1 Chondrocytes Mesoderm Connective tissue CSPGCP,CSPG1,AGC1 aggrecan Yflag
0
Mm Hs COMP 0.005 0 0.933 0.007 0.003 1 Chondrocytes Mesoderm Connective tissue THBS5,PSACH,EDM1,EPD1 cartilage oligomeric matrix protein Yflag
0
Mm Hs MATN3 0.001 0 0.4 0.001 0 1 Chondrocytes Mesoderm Connective tissue EDM5,HOA matrilin 3 Yflag
0
Mm Hs RUNX3 0.018 0 0 0.021 0 3 Chondrocytes Mesoderm Connective tissue AML2,PEBP2A3,CBFA3 runt related transcription factor 3 flag
0
Mm Hs SOX6 0.017 0 0 0.023 0 1 Chondrocytes Mesoderm Connective tissue SRY-box 6 flag
0
Mm Hs BMP2 0.008 0 0.267 0.008 0.007 2 Chondrocytes Mesoderm Connective tissue BMP2A bone morphogenetic protein 2 Yflag
0
Mm Hs CTNNB1 0.052 0 0.033 0.212 0.011 8 Chondrocytes Mesoderm Connective tissue beta-catenin,armadillo,CTNNB catenin beta 1 Yflag
0
Mm Hs FGF18 0.001 0 0 0.001 0.001 1 Chondrocytes Mesoderm Connective tissue FGF-18,ZFGF5 fibroblast growth factor 18 flag
0
Mm Hs PRG4 0.004 0 0.3 0.002 0.004 4 Chondrocytes Mesoderm Connective tissue JCAP,SZP,HAPO,bG174L6.2,FLJ32635,CACP proteoglycan 4 Yflag
0
Mm Hs PBX3 0.009 0 0 0.004 0.009 1 Chondrocytes Mesoderm Connective tissue PBX homeobox 3 flag
0
Mm Hs PTHLH 0.002 0 0 0.003 0.002 2 Chondrocytes Mesoderm Connective tissue PTHRP parathyroid hormone like hormone Yflag
0
Mm Hs SMO 0.005 0 0 0 0 2 Chondrocytes Mesoderm Connective tissue FZD11,SMOH smoothened, frizzled class receptor Yflag
0
Mm Hs STAT1 0.034 0 0 0.057 0 1 Chondrocytes Mesoderm Connective tissue STAT91,ISGF-3 signal transducer and activator of transcription 1 Yflag
0
Mm Hs MMP13 0.003 0 0 0 0.003 3 Chondrocytes Mesoderm Connective tissue CLG3 matrix metallopeptidase 13 Yflag
0
Mm Hs VEGFA 0.021 0 0 0.025 0 10 Chondrocytes Mesoderm Connective tissue VEGF-A,VPF,VEGF vascular endothelial growth factor A Yflag
0
Mm Hs MATN1 0 0 0.3 0 0 1 Chondrocytes Mesoderm Connective tissue CRTM,CMP matrilin 1 flag
0
Mm Hs COL9A1 0.006 0 0.867 0.007 0.005 2 Chondrocytes Mesoderm Connective tissue collagen type IX alpha 1 chain Yflag
0
Mm Hs COL10A1 0 0 0.067 0 0 1 Chondrocytes Mesoderm Connective tissue collagen type X alpha 1 chain Yflag
0
Mm Hs IGF2 0.013 0 0 0.046 0.001 8 Chondrocytes Mesoderm Connective tissue FLJ44734,IGF-II,C11orf43 insulin like growth factor 2 Yflag
0
Mm Hs MIA 0.003 0 0.033 0 0.004 1 Chondrocytes Mesoderm Connective tissue CD-RAP MIA SH3 domain containing flag
-2
Mm Hs COL6A1 0.063 0 0.8 0.09 0.054 3 Chondrocytes Mesoderm Connective tissue collagen type VI alpha 1 chain Yflag

Datasets with computationally identified Chondrocytes

SRA SRS tissue cluster cell type p-value FDR View
SRA653146 SRS3044263 Trachea 1 Chondrocytes 4.19E-10 2.83E-7 view data
SRA653146 SRS3044263 Trachea 2 Chondrocytes 2.54E-9 1.43E-6 view data
SRA653146 SRS3044263 Trachea 4 Chondrocytes 3.34E-5 5.64E-3 view data
SRA653146 SRS3044263 Trachea 5 Chondrocytes 1.07E-7 3.03E-5 view data
SRA653146 SRS3044263 Trachea 6 Chondrocytes 1.52E-10 1.29E-7 view data
SRA653146 SRS3044263 Trachea 11 Chondrocytes 7.43E-9 3.59E-6 view data
SRA638923 SRS2797090 Calvaria 0 Chondrocytes 3.93E-10 4.62E-7 view data
SRA638923 SRS2797090 Calvaria 1 Chondrocytes 1.18E-8 3.59E-6 view data
SRA638923 SRS2797090 Calvaria 2 Chondrocytes 1.91E-8 4.65E-6 view data
SRA638923 SRS2797090 Calvaria 3 Chondrocytes 7.59E-10 4.62E-7 view data
SRA638923 SRS2797090 Calvaria 4 Chondrocytes 9.80E-9 3.59E-6 view data
SRA638923 SRS2797090 Calvaria 5 Chondrocytes 2.02E-7 4.11E-5 view data
SRA638923 SRS2797093 Muscle 1 Chondrocytes 1.94E-10 6.49E-8 view data
SRA653146 SRS2874285 Trachea 1 Chondrocytes 4.01E-8 4.35E-6 view data
SRA653146 SRS3044262 Trachea 0 Chondrocytes 2.36E-10 1.07E-7 view data
SRA653146 SRS3044262 Trachea 5 Chondrocytes 2.05E-6 3.78E-4 view data
SRA653146 SRS3044262 Trachea 10 Chondrocytes 1.17E-6 2.24E-4 view data
SRA653146 SRS3044262 Trachea 12 Chondrocytes 1.22E-10 6.08E-8 view data
SRA638923 SRS2797097 Rib 1 Chondrocytes 3.56E-9 1.82E-6 view data
SRA638923 SRS2797094 Rib 0 Chondrocytes 7.84E-7 2.07E-4 view data
SRA638923 SRS2797094 Rib 1 Chondrocytes 3.09E-8 1.09E-5 view data
SRA638923 SRS2797094 Rib 2 Chondrocytes 2.04E-8 1.08E-5 view data
SRA638923 SRS2797095 Rib 0 Chondrocytes 2.75E-9 2.05E-6 view data
SRA638923 SRS2797095 Rib 2 Chondrocytes 1.05E-7 5.10E-5 view data
SRA638923 SRS2797095 Rib 3 Chondrocytes 3.18E-9 2.05E-6 view data
SRA638923 SRS2797046 Bone marrow 7 Chondrocytes 3.41E-9 8.35E-6 view data
SRA638923 SRS2797089 Calvaria 0 Chondrocytes 5.68E-9 2.95E-6 view data
SRA638923 SRS2797089 Calvaria 1 Chondrocytes 4.35E-8 1.13E-5 view data
SRA638923 SRS2797089 Calvaria 2 Chondrocytes 1.70E-7 2.94E-5 view data
SRA665153 SRS3030316 Airway submucosal glandular epithelial cells 3 Chondrocytes 2.23E-7 4.82E-5 view data