Cell type gene expression markers


This is a list of gene expression markers are used to define cell types. Green rows indicate canonical markers (classical markers used to define the cell type).

Summary: 8286 associations (178 cell types, 4679 gene symbols, 29 tissues); Last updated: 27/03/2020 10:44:00 CET

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Description: The choroid plexus is a plexus of cells that produces the cerebrospinal fluid in the ventricles of the brain. The choroid plexus consists of modified ependymal cells.

Gene expression markers for Choroid plexus cells

Vote(s) Species Official gene symbol UI Sensitivity (human) Sensitivity (mouse) Specificity (human) Specificity (mouse) Marker count Cell type Germ layer Organ Aliases Product description Disease Action
3
Mm Hs TTR 0.055 0 0 0.073 0 4 Choroid plexus cells Ectoderm Brain HsT2651,CTS,PALB,CTS1 transthyretin Yflag
1
Mm Hs KL 0.004 0 0.957 0 0.003 3 Choroid plexus cells Ectoderm Brain klotho Yflag
1
Mm Hs CLIC6 0.008 0 1 0.001 0.008 1 Choroid plexus cells Ectoderm Brain CLIC5,CLIC1L chloride intracellular channel 6 flag
1
Mm Hs PRLR 0.013 0 0.826 0.011 0.013 6 Choroid plexus cells Ectoderm Brain prolactin receptor Yflag
0
Mm Hs CHMP1A 0.094 0 0.087 0.056 0.1 1 Choroid plexus cells Ectoderm Brain KIAA0047,CHMP1,Vps46A,PRSM1,PCOLN3 charged multivesicular body protein 1A Yflag
0
Mm Hs SLC26A11 0 0 0 0.001 0 2 Choroid plexus cells Ectoderm Brain solute carrier family 26 member 11 flag
0
Mm Hs SLC23A2 0.007 0 0 0 0 2 Choroid plexus cells Ectoderm Brain SVCT2,KIAA0238,YSPL2,SLC23A1 solute carrier family 23 member 2 flag
0
Mm Hs WFIKKN2 0 0 0 0 0 1 Choroid plexus cells Ectoderm Brain WFIKKNRP,WFDC20B WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2 flag
0
Mm Hs SLC2A12 0.001 0 0 0 0 1 Choroid plexus cells Ectoderm Brain GLUT12 solute carrier family 2 member 12 flag
0
Mm Hs CLDN1 0.01 0 0.565 0.029 0.005 5 Choroid plexus cells Ectoderm Brain SEMP1,ILVASC claudin 1 Yflag
0
Mm Hs SLC29A4 0.006 0 0 0.009 0 2 Choroid plexus cells Ectoderm Brain FLJ34923,ENT4 solute carrier family 29 member 4 flag
0
Mm Hs SLC13A4 0.004 0 0 0.002 0 2 Choroid plexus cells Ectoderm Brain SUT-1,SUT1 solute carrier family 13 member 4 flag
0
Mm Hs CLDN2 0.009 0 0.783 0.003 0.009 2 Choroid plexus cells Ectoderm Brain claudin 2 flag
0
Mm Hs SLC31A1 0.052 0 0 0.011 0 2 Choroid plexus cells Ectoderm Brain hCTR1,CTR1,COPT1 solute carrier family 31 member 1 flag
0
Mm Hs SLC4A5 0.002 0 0 0 0 1 Choroid plexus cells Ectoderm Brain NBC4 solute carrier family 4 member 5 flag
0
Mm Hs SLC4A2 0.007 0 0 0 0 2 Choroid plexus cells Ectoderm Brain HKB3,BND3L,NBND3,EPB3L1 solute carrier family 4 member 2 flag
0
Mm Hs SLC16A2 0.023 0 0 0.003 0 4 Choroid plexus cells Ectoderm Brain XPCT,MCT8,DXS128,AHDS,MRX22 solute carrier family 16 member 2 Yflag
0
Mm Hs HTR2C 0.002 0 0.913 0 0.001 1 Choroid plexus cells Ectoderm Brain 5-HT2C,5HTR2C,HTR1C 5-hydroxytryptamine receptor 2C flag
0
Mm Hs SLC4A10 0.009 0 0 0.001 0 1 Choroid plexus cells Ectoderm Brain NBCn2,NCBE solute carrier family 4 member 10 flag
0
Mm Hs SOSTDC1 0.009 0 0 0.002 0 2 Choroid plexus cells Ectoderm Brain DKFZp564D206,USAG1,DAND7 sclerostin domain containing 1 flag
-1
Mm CAR12 0.004 0 0.913 0 0.004 2 Choroid plexus cells Ectoderm Brain carbonic anhydrase 12 flag
-1
Mm Hs AQP1 0.037 0 0.87 0.018 0.041 12 Choroid plexus cells Ectoderm Brain CHIP28,CO aquaporin 1 (Colton blood group) Yflag

Datasets with computationally identified Choroid plexus cells

SRA SRS tissue cluster cell type p-value FDR View
SRA667466 SRS3060024 Medulla oblongata 14 Choroid plexus cells 4.02E-22 8.50E-20 view data
SRA675945 SRS3100155 Hippocampus 8 Choroid plexus cells 2.52E-20 9.76E-18 view data
SRA675945 SRS3100155 Hippocampus 13 Choroid plexus cells 6.14E-15 1.62E-12 view data
SRA667466 SRS3059995 Medulla oblongata 14 Choroid plexus cells 3.18E-20 9.20E-18 view data
SRA667466 SRS3060019 Medulla oblongata 12 Choroid plexus cells 3.36E-21 7.28E-19 view data
SRA675945 SRS3100154 Hippocampus 17 Choroid plexus cells 1.80E-16 8.17E-14 view data
SRA675945 SRS3100154 Hippocampus 18 Choroid plexus cells 2.26E-5 2.43E-3 view data
SRA592147 SRS2384618 Hippocampus (injury) 7 Choroid plexus cells 1.83E-11 6.45E-9 view data
SRA592147 SRS2384616 Hippocampus (injury) 1 Choroid plexus cells 3.86E-12 2.38E-9 view data
SRA667466 SRS3059997 Medulla oblongata 13 Choroid plexus cells 2.24E-20 5.26E-18 view data
SRA667466 SRS3059993 Medulla oblongata 16 Choroid plexus cells 9.54E-19 2.64E-16 view data
SRA667466 SRS3060059 Thalamus 19 Choroid plexus cells 3.24E-9 7.47E-7 view data
SRA667466 SRS3059992 Medulla oblongata 14 Choroid plexus cells 2.75E-22 9.69E-20 view data
SRA751294 SRS3625044 Hindbrain 32 Choroid plexus cells 9.37E-13 1.42E-9 view data
SRA866994 SRS4545967 Choroid plexus 13 Choroid plexus cells 1.46E-14 3.76E-12 view data
SRA675945 SRS3100151 Hippocampus 16 Choroid plexus cells 7.17E-18 3.03E-15 view data
SRA667466 SRS3060048 Thalamus 14 Choroid plexus cells 5.93E-9 1.57E-6 view data
SRA866994 SRS4545959 Choroid plexus 16 Choroid plexus cells 5.75E-16 1.44E-13 view data
SRA675945 SRS3100152 Hippocampus 23 Choroid plexus cells 2.66E-21 1.03E-18 view data
SRA667466 SRS3059956 Thalamus 15 Choroid plexus cells 2.08E-12 4.62E-10 view data
SRA667466 SRS3059974 Medulla oblongata 11 Choroid plexus cells 2.10E-20 4.26E-18 view data
SRA667466 SRS3060064 Medulla oblongata 9 Choroid plexus cells 2.05E-16 8.43E-14 view data
SRA667466 SRS3060023 Medulla oblongata 13 Choroid plexus cells 2.06E-21 4.47E-19 view data