Cell type gene expression markers


This is a list of gene expression markers are used to define cell types. Green rows indicate canonical markers (classical markers used to define the cell type).

Summary: 8286 associations (178 cell types, 4679 gene symbols, 29 tissues); Last updated: 27/03/2020 10:44:00 CET

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Description: Intestinal stem cells.

Gene expression markers for Crypt cells

Vote(s) Species Official gene symbol UI Sensitivity (human) Sensitivity (mouse) Specificity (human) Specificity (mouse) Marker count Cell type Germ layer Organ Aliases Product description Disease Action
3
Mm Hs OLFM4 0.013 0 0 0.015 0.013 2 Crypt cells Endoderm GI tract OlfD,GW112 olfactomedin 4 flag
2
Mm Hs LGR5 0.002 0 0 0 0.002 3 Crypt cells Endoderm GI tract HG38,FEX,GPR67,GPR49 leucine rich repeat containing G protein-coupled receptor 5 flag
0
Mm Hs KCNE3 0.01 0 0 0.001 0.012 2 Crypt cells Endoderm GI tract MiRP2 potassium voltage-gated channel subfamily E regulatory subunit 3 Yflag
0
Mm Hs KCNQ1 0.004 0 0 0.001 0.005 4 Crypt cells Endoderm GI tract Kv7.1,KCNA8,KVLQT1,JLNS1,LQT1,LQT,KCNA9 potassium voltage-gated channel subfamily Q member 1 Yflag
0
Mm Hs PROM1 0.021 0 0 0.007 0.024 6 Crypt cells Endoderm GI tract AC133,CD133,RP41,CORD12,PROML1,STGD4 prominin 1 Yflag
0
Mm Hs EPHB2 0.002 0 0 0.005 0.002 1 Crypt cells Endoderm GI tract Hek5,Tyro5,DRT,EPHT3 EPH receptor B2 Yflag
0
Mm Hs ASCL2 0.005 0 0 0.008 0.005 4 Crypt cells Endoderm GI tract HASH2,bHLHa45 achaete-scute family bHLH transcription factor 2 flag
0
Mm Hs BMI1 0.009 0 0 0.005 0.009 6 Crypt cells Endoderm GI tract RNF51,PCGF4 BMI1 proto-oncogene, polycomb ring finger flag
0
Mm Hs HOPX 0.033 0 0 0.092 0.022 10 Crypt cells Endoderm GI tract LAGY,OB1,NECC1,SMAP31 HOP homeobox flag
0
Mm Hs LRIG1 0.004 0 0 0.002 0.004 1 Crypt cells Endoderm GI tract LIG-1,DKFZP586O1624,LIG1 leucine rich repeats and immunoglobulin like domains 1 flag
0
Mm Hs TERT 0 0 0 0 0 2 Crypt cells Endoderm GI tract TRT,TCS1,hEST2,EST2 telomerase reverse transcriptase Yflag
0
Mm Hs MSI1 0.022 0 0 0.025 0.022 3 Crypt cells Endoderm GI tract musashi RNA binding protein 1 flag
0
Mm Hs SMOC2 0.026 0 0 0.018 0 4 Crypt cells Endoderm GI tract SMAP2 SPARC related modular calcium binding 2 Yflag
0
Mm Hs TNFRSF19 0.017 0 0 0.002 0 2 Crypt cells Endoderm GI tract TAJ-alpha,TROY,TAJ,TRADE TNF receptor superfamily member 19 flag
0
Mm Hs SLC12A2 0.074 0 0 0.05 0 4 Crypt cells Endoderm GI tract NKCC1,BSC,BSC2,PPP1R141 solute carrier family 12 member 2 flag
0
Mm Hs AXIN2 0.006 0 0 0.001 0.008 2 Crypt cells Endoderm GI tract MGC126582,DKFZp781B0869 axin 2 Yflag

Datasets with computationally identified Crypt cells

No data identified with this cell type.