Cell type gene expression markers


This is a list of gene expression markers are used to define cell types. Green rows indicate canonical markers (classical markers used to define the cell type).

Summary: 8286 associations (178 cell types, 4679 gene symbols, 29 tissues); Last updated: 27/03/2020 10:44:00 CET

Filter

get tsv file add marker

Gene expression markers for Embryonic stem cells

Vote(s) Species Official gene symbol UI Sensitivity (human) Sensitivity (mouse) Specificity (human) Specificity (mouse) Marker count Cell type Germ layer Organ Aliases Product description Disease Action
2
Mm Hs ZFP42 0.006 0 0 0.003 0 2 Embryonic stem cells Epiblast Zygote REX1,ZNF754 ZFP42 zinc finger protein flag
0
Mm Hs DPPA4 0.007 0 1 0.013 0.003 1 Embryonic stem cells Epiblast Zygote FLJ10713 developmental pluripotency associated 4 flag
0
Mm Hs DPPA2 0.003 0 0.909 0.003 0.002 1 Embryonic stem cells Epiblast Zygote PESCRG1,CT100 developmental pluripotency associated 2 flag
0
Mm Hs GDF3 0.003 0 1 0.005 0.002 1 Embryonic stem cells Epiblast Zygote growth differentiation factor 3 Yflag
0
Mm Hs L1TD1 0.011 0 0.909 0.026 0.006 1 Embryonic stem cells Epiblast Zygote FLJ10884,ECAT11 LINE1 type transposase domain containing 1 flag
0
Mm Hs LEF1 0.025 0 0 0.009 0.028 6 Embryonic stem cells Epiblast Zygote TCF1ALPHA,TCF10,TCF7L3 lymphoid enhancer binding factor 1 flag
0
Mm Hs STAT3 0.099 0 0 0.149 0 3 Embryonic stem cells Epiblast Zygote APRF signal transducer and activator of transcription 3 Yflag
0
Mm Hs NR6A1 0.017 0 0.273 0.07 0.004 2 Embryonic stem cells Epiblast Zygote GCNF1,RTR,CT150,GCNF nuclear receptor subfamily 6 group A member 1 flag
0
Mm Hs NACC1 0.01 0 1 0.001 0.011 1 Embryonic stem cells Epiblast Zygote NAC-1,BEND8,BTBD30,BTBD14B nucleus accumbens associated 1 flag
0
Mm Hs HMGA2 0.038 0 0.455 0.06 0.027 1 Embryonic stem cells Epiblast Zygote BABL,LIPO,HMGIC high mobility group AT-hook 2 Yflag
0
Mm Hs TAF8 0.001 0 0 0.005 0 1 Embryonic stem cells Epiblast Zygote FLJ32821,TAF(II)43,TBN TATA-box binding protein associated factor 8 flag
0
Mm Hs ZFX 0.006 0 0 0.014 0 2 Embryonic stem cells Epiblast Zygote ZNF926 zinc finger protein X-linked flag
0
Mm Hs KLF4 0.126 0 1 0.139 0.127 3 Embryonic stem cells Epiblast Zygote EZF,GKLF Kruppel like factor 4 flag
0
Mm Hs SOX2 0.082 0 0 0.029 0 6 Embryonic stem cells Epiblast Zygote SRY-box 2 Yflag
0
Mm Hs FZD1 0.01 0 0 0.003 0.012 3 Embryonic stem cells Epiblast Zygote DKFZp564G072 frizzled class receptor 1 flag
0
Mm Hs ITGA6 0.059 0 1 0.05 0.061 3 Embryonic stem cells Epiblast Zygote CD49f integrin subunit alpha 6 Yflag
0
Mm Hs PECAM1 0.051 0 0.545 0.044 0.053 8 Embryonic stem cells Epiblast Zygote CD31 platelet and endothelial cell adhesion molecule 1 flag
0
Mm Hs PROM1 0.021 0 0 0.007 0.024 6 Embryonic stem cells Epiblast Zygote AC133,CD133,RP41,CORD12,PROML1,STGD4 prominin 1 Yflag
0
Mm Hs ITGB1 0.276 0 0.818 0.169 0.302 4 Embryonic stem cells Epiblast Zygote CD29,GPIIA,FNRB,MSK12,MDF2 integrin subunit beta 1 flag
0
Mm Hs MYC 0.047 0 0 0.109 0.033 1 Embryonic stem cells Epiblast Zygote c-Myc,bHLHe39,MYCC MYC proto-oncogene, bHLH transcription factor Yflag
0
Mm Hs EPCAM 0.117 0 0.818 0.169 0.104 5 Embryonic stem cells Epiblast Zygote Ly74,TROP1,GA733-2,EGP34,EGP40,EGP-2,KSA,CD326,Ep-CAM,HEA125,KS1/4,MK-1,MH99,MOC31,323/A3,17-1A,TACST-1,CO-17A,M4S1,MIC18,TACSTD1 epithelial cell adhesion molecule Yflag
0
Mm Hs HES1 0.129 0 0.909 0.146 0.127 4 Embryonic stem cells Epiblast Zygote FLJ20408,HES-1,Hes1,bHLHb39,HRY hes family bHLH transcription factor 1 flag
0
Mm ZSCAN4D 0 NA NA NA NA 1 Embryonic stem cells Epiblast Zygote zinc finger and SCAN domain containing 4D flag
0
Mm Hs IL6ST 0.055 0 0 0.091 0.048 2 Embryonic stem cells Epiblast Zygote CD130 interleukin 6 signal transducer flag
0
Mm Hs LIFR 0.042 0 0.364 0.022 0.046 2 Embryonic stem cells Epiblast Zygote CD118 LIF receptor alpha Yflag
0
Mm Hs PIWIL4 0.001 0 0 0.003 0 1 Embryonic stem cells Epiblast Zygote FLJ36156,HIWI2,Miwi2 piwi like RNA-mediated gene silencing 4 flag
0
Mm Hs PIWIL2 0.005 0 0 0.02 0.003 2 Embryonic stem cells Epiblast Zygote HILI,FLJ10351,Mili,CT80 piwi like RNA-mediated gene silencing 2 flag
0
Mm Hs PIWIL1 0.003 0 0 0.014 0.001 1 Embryonic stem cells Epiblast Zygote PIWI,HIWI,CT80.1 piwi like RNA-mediated gene silencing 1 flag
0
Mm Hs TRIM28 0.18 0 0 0.097 0 1 Embryonic stem cells Epiblast Zygote TIF1B,KAP1,TF1B,RNF96,PPP1R157 tripartite motif containing 28 Yflag
0
Mm Hs DNMT3B 0.012 0 0.364 0.01 0.011 2 Embryonic stem cells Epiblast Zygote DNA methyltransferase 3 beta Yflag
0
Mm Hs ESRRB 0.002 0 1 0 0.001 1 Embryonic stem cells Epiblast Zygote ERR2,ERRbeta,NR3B2,ERRb,ESRL2,DFNB35 estrogen related receptor beta Yflag
0
Mm Hs CD9 0.344 0 1 0.271 0.366 6 Embryonic stem cells Epiblast Zygote BA2,P24,TSPAN29,MRP-1,MIC3 CD9 molecule flag
0
Mm Hs HHEX 0.037 0 0.364 0.023 0.039 8 Embryonic stem cells Epiblast Zygote HEX,HOX11L-PEN,PRHX hematopoietically expressed homeobox flag
0
Mm Hs CTNNB1 0.052 0 0 0.212 0.011 8 Embryonic stem cells Epiblast Zygote beta-catenin,armadillo,CTNNB catenin beta 1 Yflag
0
Mm Hs SMAD3 0.008 0 0 0.023 0 2 Embryonic stem cells Epiblast Zygote JV15-2,HsT17436,MADH3 SMAD family member 3 Yflag
0
Mm Hs SMAD2 0.024 0 0 0.069 0 1 Embryonic stem cells Epiblast Zygote MADR2,JV18-1,MADH2 SMAD family member 2 flag
0
Mm Hs SMAD4 0.018 0 0 0.009 0 2 Embryonic stem cells Epiblast Zygote DPC4,MADH4 SMAD family member 4 Yflag
0
Mm Hs SMAD9 0.002 0 0 0.008 0 2 Embryonic stem cells Epiblast Zygote SMAD8,SMAD8/9,MADH9 SMAD family member 9 Yflag
0
Mm Hs SMAD5 0.019 0 0 0.027 0 2 Embryonic stem cells Epiblast Zygote Dwfc,JV5-1,MADH5 SMAD family member 5 flag
0
Mm Hs SMAD1 0.036 0 0 0.015 0 2 Embryonic stem cells Epiblast Zygote MADR1,JV4-1,MADH1 SMAD family member 1 flag
0
Mm Hs DPPA3 0.002 0 0.364 0 0.002 1 Embryonic stem cells Epiblast Zygote Stella,Pgc7 developmental pluripotency associated 3 flag
0
Mm Hs ANO6 0.012 0 0 0.008 0.013 1 Embryonic stem cells Epiblast Zygote DKFZp313M0720,TMEM16F anoctamin 6 Yflag
0
Mm Hs BCL3 0.012 0 0.636 0.009 0.013 2 Embryonic stem cells Epiblast Zygote D19S37,BCL4 B cell CLL/lymphoma 3 flag
0
Mm Hs PITX2 0.01 0 0.091 0.011 0.009 5 Embryonic stem cells Epiblast Zygote IGDS,Brx1,Otlx2,IRID2,IHG2,RIEG,RIEG1,RGS paired like homeodomain 2 Yflag
0
Mm Hs GAL 0.014 0 0 0.018 0.011 6 Embryonic stem cells Epiblast Zygote GMAP,GAL-GMAP,GLNN,GALN galanin and GMAP prepropeptide Yflag
0
Mm Hs NANOG 0.002 0 1 0 0.001 3 Embryonic stem cells Epiblast Zygote FLJ12581,FLJ40451 Nanog homeobox flag
0
Mm Hs PCGF2 0.005 0 0.909 0.015 0.002 1 Embryonic stem cells Epiblast Zygote MEL-18,ZNF144,RNF110 polycomb group ring finger 2 flag
0
Mm Hs KCNIP3 0.007 0 0 0 0.009 3 Embryonic stem cells Epiblast Zygote DREAM,KCHIP3,CSEN potassium voltage-gated channel interacting protein 3 flag
0
Mm Hs ZSCAN10 0 0 0 0 0 1 Embryonic stem cells Epiblast Zygote ZNF206 zinc finger and SCAN domain containing 10 flag
0
Mm Hs SLC46A2 0.002 0 0 0 0 2 Embryonic stem cells Epiblast Zygote Ly110,TSCOT solute carrier family 46 member 2 flag
0
Mm Hs CDK8 0.009 0 0 0.006 0.01 1 Embryonic stem cells Epiblast Zygote K35 cyclin dependent kinase 8 flag
0
Mm Hs THY1 0.095 0 0 0.032 0 7 Embryonic stem cells Epiblast Zygote CD90 Thy-1 cell surface antigen flag
0
Mm Hs PRDM5 0.001 0 0 0.008 0 1 Embryonic stem cells Epiblast Zygote PR/SET domain 5 Yflag
0
Mm Hs ZIC1 0.046 0 0 0.008 0 4 Embryonic stem cells Epiblast Zygote ZIC,ZNF201 Zic family member 1 Yflag
0
Mm Hs PODXL 0.04 0 0 0.041 0.04 4 Embryonic stem cells Epiblast Zygote PCLP,Gp200,PC podocalyxin like Yflag
0
Mm Hs ABCG2 0.038 0 0.182 0.005 0.047 7 Embryonic stem cells Epiblast Zygote EST157481,MXR,BCRP,ABCP,CD338 ATP binding cassette subfamily G member 2 (Junior blood group) Yflag
0
Mm Hs CDH1 0.056 0 1 0.042 0.057 15 Embryonic stem cells Epiblast Zygote uvomorulin,CD324,UVO cadherin 1 Yflag
0
Mm Hs ITGA4 0.036 0 0 0.011 0.041 7 Embryonic stem cells Epiblast Zygote CD49d,CD49D integrin subunit alpha 4 flag
0
Mm Hs FUT4 0.001 0 0 0 0.001 7 Embryonic stem cells Epiblast Zygote FUC-TIV,CD15,ELFT fucosyltransferase 4 flag
0
Mm Hs POU5F1 0.003 0 0.909 0.001 0.002 4 Embryonic stem cells Epiblast Zygote Oct4,MGC22487,OTF3 POU class 5 homeobox 1 flag
0
Mm Hs FOXD3 0 0 0 0 0 2 Embryonic stem cells Epiblast Zygote Genesis,HFH2 forkhead box D3 Yflag
0
Mm Hs GJB4 0.003 0 0 0.001 0.004 1 Embryonic stem cells Epiblast Zygote CX30.3 gap junction protein beta 4 Yflag
0
Mm Hs KIT 0.015 0 0.909 0.003 0.018 10 Embryonic stem cells Epiblast Zygote CD117,SCFR,C-Kit,PBT KIT proto-oncogene receptor tyrosine kinase Yflag
0
Mm Hs PML 0.007 0 1 0.008 0.006 2 Embryonic stem cells Epiblast Zygote MYL,TRIM19,RNF71 promyelocytic leukemia flag
0
Mm Hs FBXO15 0.005 0 1 0.011 0.002 1 Embryonic stem cells Epiblast Zygote MGC39671,FBX15 F-box protein 15 flag
0
Mm Hs LMNA 0.201 0 0.091 0.333 0.167 1 Embryonic stem cells Epiblast Zygote LMN1,CMD1A,LGMD1B lamin A/C Yflag
0
Mm Hs GJB1 0.033 0 0 0.01 0.038 4 Embryonic stem cells Epiblast Zygote CX32,CMTX1,CMTX gap junction protein beta 1 Yflag
0
Mm Hs UTF1 0 0 0 0 0 1 Embryonic stem cells Epiblast Zygote undifferentiated embryonic cell transcription factor 1 flag
0
Mm Hs SOX15 0.003 0 0 0.004 0 1 Embryonic stem cells Epiblast Zygote SOX27,SOX26,SOX20 SRY-box 15 flag
0
Mm Hs PUM2 0.094 0 1 0.009 0.113 1 Embryonic stem cells Epiblast Zygote PUMH2,KIAA0235 pumilio RNA binding family member 2 flag
0
Mm Hs TRIM6 0.006 0 0 0.001 0 1 Embryonic stem cells Epiblast Zygote RNF89 tripartite motif containing 6 flag
0
Mm Hs GJC1 0.026 0 1 0.011 0.029 4 Embryonic stem cells Epiblast Zygote CX45,GJA7 gap junction protein gamma 1 flag
0
Mm Hs BNIP3 0.042 0 0.091 0.163 0.007 3 Embryonic stem cells Epiblast Zygote Nip3 BCL2 interacting protein 3 flag
0
Mm Hs SUMO2 0.163 0 0 0.717 0 1 Embryonic stem cells Epiblast Zygote SMT3B,SMT3H2 small ubiquitin-like modifier 2 flag
0
Mm Hs HOXB5 0.003 0 0 0.005 0.002 3 Embryonic stem cells Epiblast Zygote HOX2A homeobox B5 flag
0
Mm Hs TDGF1 0.007 0 0 0.008 0 2 Embryonic stem cells Epiblast Zygote CRIPTO,Cripto-1 teratocarcinoma-derived growth factor 1 flag
0
Mm DPPA5A 0.013 0 1 0 0.013 1 Embryonic stem cells Epiblast Zygote developmental pluripotency associated 5A flag
0
Mm Hs SALL4 0.015 0 0 0.012 0 1 Embryonic stem cells Epiblast Zygote dJ1112F19.1,ZNF797 spalt like transcription factor 4 Yflag
-1
Hs TEX19 0.001 0 0 0.005 0 2 Embryonic stem cells Epiblast Zygote FLJ35767 testis expressed 19 flag
-1
Hs KHDC3L 0 0 0 0 0 1 Embryonic stem cells Epiblast Zygote ECAT1,C6orf221 KH domain containing 3 like, subcortical maternal complex member Yflag
-1
Hs KITLG 0.001 0 0 0.006 0 4 Embryonic stem cells Epiblast Zygote SCF,Kitl,KL-1,FPH2,SLF,DFNA69 KIT ligand Yflag
-1
Hs ALPP 0 0 0 0 0 1 Embryonic stem cells Epiblast Zygote PALP alkaline phosphatase, placental flag
-1
Hs CD24 0.039 0 0 0.192 0 8 Embryonic stem cells Epiblast Zygote CD24A CD24 molecule flag
-1
Hs CD59 0.07 0 0 0.372 0 2 Embryonic stem cells Epiblast Zygote 16.3A5,EJ16,EJ30,EL32,G344,p18-20,MIC11,MIN1,MSK21,MIN2,MIN3 CD59 molecule (CD59 blood group) Yflag
-1
Hs DPPA5 0 0 0 0 0 1 Embryonic stem cells Epiblast Zygote Esg1 developmental pluripotency associated 5 flag

Datasets with computationally identified Embryonic stem cells

SRA SRS tissue cluster cell type p-value FDR View
SRA711739 SRS3344663 Embryonic fibroblasts 0 Embryonic stem cells 1.55E-5 7.44E-3 view data
SRA711739 SRS3344663 Embryonic fibroblasts 1 Embryonic stem cells 3.75E-6 7.44E-3 view data
SRA711739 SRS3344663 Embryonic fibroblasts 3 Embryonic stem cells 6.38E-6 7.44E-3 view data
SRA711739 SRS3344663 Embryonic fibroblasts 5 Embryonic stem cells 1.50E-5 7.44E-3 view data
SRA711739 SRS3344663 Embryonic fibroblasts 8 Embryonic stem cells 1.75E-5 7.44E-3 view data
SRA711739 SRS3344663 Embryonic fibroblasts 10 Embryonic stem cells 1.79E-5 7.44E-3 view data
SRA711739 SRS3344659 Embryonic fibroblasts 12 Embryonic stem cells 6.13E-6 1.42E-2 view data
SRA711739 SRS3344660 Embryonic fibroblasts 4 Embryonic stem cells 8.52E-5 4.85E-2 view data
SRA711739 SRS3344652 Embryonic fibroblasts 0 Embryonic stem cells 1.81E-6 4.82E-3 view data
SRA711739 SRS3344661 Embryonic fibroblasts 2 Embryonic stem cells 4.97E-5 2.43E-2 view data
SRA711739 SRS3344661 Embryonic fibroblasts 3 Embryonic stem cells 3.22E-5 2.10E-2 view data
SRA843432 SRS4322342 Kaposi's sarcoma 0 Embryonic stem cells 5.67E-5 3.68E-2 view data
SRA843432 SRS4322342 Kaposi's sarcoma 5 Embryonic stem cells 3.10E-5 3.68E-2 view data
SRA843432 SRS4322342 Kaposi's sarcoma 10 Embryonic stem cells 5.22E-5 3.68E-2 view data