Cell type gene expression markers


This is a list of gene expression markers are used to define cell types. Green rows indicate canonical markers (classical markers used to define the cell type).

Summary: 8286 associations (178 cell types, 4679 gene symbols, 29 tissues); Last updated: 27/03/2020 10:44:00 CET

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Gene expression markers for Enteric neurons

Vote(s) Species Official gene symbol UI Sensitivity (human) Sensitivity (mouse) Specificity (human) Specificity (mouse) Marker count Cell type Germ layer Organ Aliases Product description Disease Action
1
Mm Hs VIP 0.003 0 0 0 0 3 Enteric neurons Endoderm GI tract vasoactive intestinal peptide flag
1
Mm Hs TAC1 0.01 0 0 0.005 0 6 Enteric neurons Endoderm GI tract NPK,TAC2,NKNA tachykinin precursor 1 flag
0
Mm Hs TOX 0.016 0 0 0.003 0 1 Enteric neurons Endoderm GI tract KIAA0808,TOX1 thymocyte selection associated high mobility group box flag
0
Mm Hs JPH3 0.024 0 0.833 0 0.029 2 Enteric neurons Endoderm GI tract JP-3,CAGL237,HDL2,JP3,TNRC22 junctophilin 3 Yflag
0
Mm Hs SLC7A14 0.011 0 0 0 0 1 Enteric neurons Endoderm GI tract KIAA1613,PPP1R142 solute carrier family 7 member 14 Yflag
0
Mm Hs FLOT2 0.022 0 0.889 0.015 0.024 2 Enteric neurons Endoderm GI tract ECS-1,ECS1,M17S1 flotillin 2 flag
0
Mm Hs GFRA2 0.008 0 0.667 0.004 0.009 4 Enteric neurons Endoderm GI tract RETL2,GDNFRB,NTNRA,TRNR2 GDNF family receptor alpha 2 flag
0
Mm Hs CYB561 0.027 0 0.556 0.015 0.027 2 Enteric neurons Endoderm GI tract FRRS2,CYB561A1 cytochrome b561 flag
0
Mm Hs PLCE1 0.005 0 0.611 0.008 0.004 3 Enteric neurons Endoderm GI tract KIAA1516,NPHS3 phospholipase C epsilon 1 Yflag
0
Mm Hs GPR22 0.007 0 0.556 0.001 0.008 1 Enteric neurons Endoderm GI tract G protein-coupled receptor 22 flag
0
Mm Hs CELF6 0.014 0 0.889 0 0.017 2 Enteric neurons Endoderm GI tract BRUNOL6 CUGBP Elav-like family member 6 flag
0
Mm Hs VSTM2L 0.011 0 0 0.005 0 2 Enteric neurons Endoderm GI tract dJ1118M15.2,C20orf102 V-set and transmembrane domain containing 2 like flag
0
Mm Hs SLC18A3 0.002 0 0 0.001 0 4 Enteric neurons Endoderm GI tract VACHT solute carrier family 18 member A3 flag
0
Mm Hs GOLGA7B 0.018 0 0.5 0 0.022 2 Enteric neurons Endoderm GI tract bA459F3.4,bA451M19.3,C10orf133,C10orf132 golgin A7 family member B flag
0
Mm Hs TLX2 0.004 0 0 0 0 1 Enteric neurons Endoderm GI tract Enx,Tlx2,NCX,HOX11L1 T cell leukemia homeobox 2 flag
0
Mm Hs HOXB4 0.006 0 0.444 0.005 0.003 1 Enteric neurons Endoderm GI tract HOX2F homeobox B4 flag
0
Mm Hs EFNA5 0.029 0 0.722 0.025 0.029 3 Enteric neurons Endoderm GI tract AF1,LERK7,EPLG7 ephrin A5 flag
0
Mm Hs FAM19A5 0.014 0 0.278 0 0.017 1 Enteric neurons Endoderm GI tract TAFA-5 family with sequence similarity 19 member A5, C-C motif chemokine like flag
0
Mm Hs HAND2 0.004 0 0.722 0.009 0.001 2 Enteric neurons Endoderm GI tract dHand,Thing2,Hed,bHLHa26 heart and neural crest derivatives expressed 2 flag
0
Mm Hs CASZ1 0.016 0 0.667 0 0.02 2 Enteric neurons Endoderm GI tract FLJ20321,ZNF693,castor,cst,SRG castor zinc finger 1 flag
0
Mm Hs SCN3A 0.022 0 0 0.006 0 2 Enteric neurons Endoderm GI tract Nav1.3 sodium voltage-gated channel alpha subunit 3 flag
0
Mm Hs CHRNA3 0.004 0 1 0 0.003 2 Enteric neurons Endoderm GI tract cholinergic receptor nicotinic alpha 3 subunit Yflag
0
Mm Hs PARVA 0.03 0 0.667 0.022 0.031 1 Enteric neurons Endoderm GI tract FLJ12254,FLJ10793,MXRA2 parvin alpha flag
0
Mm Hs SLC10A4 0.005 0 0 0.001 0 1 Enteric neurons Endoderm GI tract MGC29802 solute carrier family 10 member 4 flag
0
Mm Hs TM4SF4 0.017 0 0 0.021 0 3 Enteric neurons Endoderm GI tract il-TMP transmembrane 4 L six family member 4 flag
0
Mm Hs FAM19A1 0.009 0 0.611 0.001 0.011 1 Enteric neurons Endoderm GI tract TAFA-1,TAFA1 family with sequence similarity 19 member A1, C-C motif chemokine like flag
0
Mm Hs SLC5A7 0.002 0 0 0 0 3 Enteric neurons Endoderm GI tract hCHT,CHT1 solute carrier family 5 member 7 Yflag
0
Mm Hs PHOX2B 0.002 0 1 0 0.001 2 Enteric neurons Endoderm GI tract Phox2b,NBPhox,PMX2B paired like homeobox 2b Yflag
0
Mm Hs PIRT 0.005 0 1 0 0.006 2 Enteric neurons Endoderm GI tract phosphoinositide interacting regulator of transient receptor potential channels flag
0
Mm Hs HOXB5 0.003 0 0.833 0.005 0.001 3 Enteric neurons Endoderm GI tract HOX2A homeobox B5 flag
0
Mm Hs HOXA5 0.005 0 0.833 0.002 0.005 1 Enteric neurons Endoderm GI tract HOX1C homeobox A5 flag
0
Mm Hs GAL 0.014 0 0.389 0.018 0.011 6 Enteric neurons Endoderm GI tract GMAP,GAL-GMAP,GLNN,GALN galanin and GMAP prepropeptide Yflag
0
Mm Hs CARTPT 0.008 0 0.389 0.007 0.008 3 Enteric neurons Endoderm GI tract CART CART prepropeptide Yflag
0
Mm Hs NMU 0.002 0 0.111 0.008 0 1 Enteric neurons Endoderm GI tract neuromedin U flag
0
Mm Hs CCK 0.033 0 0.056 0.003 0.038 7 Enteric neurons Endoderm GI tract cholecystokinin flag
0
Mm Hs FILIP1 0.006 0 0.5 0.011 0.004 1 Enteric neurons Endoderm GI tract FILIP,KIAA1275 filamin A interacting protein 1 flag
0
Mm Hs PPP2R5B 0.015 0 0.611 0 0.018 1 Enteric neurons Endoderm GI tract FLJ35411,B56B,PR61B,B56beta protein phosphatase 2 regulatory subunit B'beta flag
0
Mm Hs FBXO7 0.046 0 0.5 0.176 0.016 1 Enteric neurons Endoderm GI tract FBX7,Fbx,PARK15 F-box protein 7 Yflag
0
Mm Hs RGMB 0.009 0 0 0.006 0 3 Enteric neurons Endoderm GI tract FLJ90406,DRAGON repulsive guidance molecule BMP co-receptor b flag
0
Mm Hs MAP6 0.012 0 0.722 0.012 0.012 1 Enteric neurons Endoderm GI tract KIAA1878,STOP,FLJ41346,MAP6-N microtubule associated protein 6 flag
0
Mm Hs AHDC1 0.009 0 0.389 0.002 0.01 1 Enteric neurons Endoderm GI tract DJ159A19.3,RP1-159A19.1 AT-hook DNA binding motif containing 1 Yflag
0
Mm Hs RET 0.007 0 0 0.001 0 1 Enteric neurons Endoderm GI tract CDHF12,RET51,CDHR16,HSCR1,MEN2A,MTC1,MEN2B ret proto-oncogene Yflag
0
Mm Hs VEZT 0.017 0 0 0.021 0 1 Enteric neurons Endoderm GI tract DKFZP761C241 vezatin, adherens junctions transmembrane protein flag
0
Mm Hs GCNT2 0.015 0 0.444 0.011 0.016 2 Enteric neurons Endoderm GI tract IGNT,NAGCT1,bA421M1.1,bA360O19.2,ULG3,NACGT1,II,GCNT5,CCAT glucosaminyl (N-acetyl) transferase 2 (I blood group) Yflag
0
Mm Hs SNX21 0.014 0 0 0.002 0 1 Enteric neurons Endoderm GI tract dJ337O18.4,SNX-L,C20orf161 sorting nexin family member 21 flag
0
Mm Hs TUB 0.004 0 0 0.001 0 1 Enteric neurons Endoderm GI tract rd5 tubby bipartite transcription factor Yflag
0
Mm Hs CACNA1E 0.023 0 0.278 0.002 0.028 2 Enteric neurons Endoderm GI tract Cav2.3,BII,CACH6,CACNL1A6 calcium voltage-gated channel subunit alpha1 E flag
0
Mm Hs ASTN1 0.013 0 0.278 0 0.016 1 Enteric neurons Endoderm GI tract ASTN astrotactin 1 flag
0
Mm Hs TTBK2 0.011 0 0 0.007 0 1 Enteric neurons Endoderm GI tract KIAA0847,SCA11 tau tubulin kinase 2 Yflag
0
Mm Hs ARHGAP26 0.016 0 0.722 0.011 0.017 2 Enteric neurons Endoderm GI tract GRAF,KIAA0621,OPHN1L,OPHN1L1 Rho GTPase activating protein 26 Yflag
0
Mm Hs IGF2BP3 0.03 0 0.278 0.002 0.037 1 Enteric neurons Endoderm GI tract IMP-3,CT98 insulin like growth factor 2 mRNA binding protein 3 flag
0
Mm Hs PLEKHA5 0.026 0 0.556 0.052 0.018 1 Enteric neurons Endoderm GI tract KIAA1686,FLJ10667 pleckstrin homology domain containing A5 flag
0
Mm Hs DMKN 0.032 0 0.444 0.065 0.019 2 Enteric neurons Endoderm GI tract ZD52F10 dermokine flag
0
Mm Hs ARHGEF28 0.008 0 0.722 0.002 0.009 1 Enteric neurons Endoderm GI tract RGNEF,p190RhoGEF Rho guanine nucleotide exchange factor 28 flag
0
Mm Hs SCN7A 0.017 0 0 0.008 0 4 Enteric neurons Endoderm GI tract Nav2.1,Nav2.2,NaG,SCN6A sodium voltage-gated channel alpha subunit 7 flag
0
Mm Hs MFSD6 0.017 0 0.889 0.003 0.02 1 Enteric neurons Endoderm GI tract FLJ20160 major facilitator superfamily domain containing 6 flag
0
Mm Hs EML5 0.01 0 0.833 0 0.011 3 Enteric neurons Endoderm GI tract HuEMAP-2 echinoderm microtubule associated protein like 5 flag
0
Mm Hs MYL1 0.003 0 0.389 0.001 0.002 2 Enteric neurons Endoderm GI tract myosin light chain 1 flag
0
Mm Hs ZDHHC2 0.015 0 0 0.006 0 2 Enteric neurons Endoderm GI tract ZNF372,DHHC2 zinc finger DHHC-type containing 2 flag
0
Mm Hs PIK3CA 0.017 0 0.778 0.001 0.021 1 Enteric neurons Endoderm GI tract PI3K phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha Yflag
0
Mm Hs CACNA1B 0.016 0 0.722 0 0.02 1 Enteric neurons Endoderm GI tract Cav2.2,CACNN,CACNL1A5 calcium voltage-gated channel subunit alpha1 B Yflag
0
Mm Hs HIVEP3 0.007 0 0.389 0.004 0.007 1 Enteric neurons Endoderm GI tract KRC,KBP1,KBP-1,SHN3,FLJ16752,KIAA1555,ZAS3,Schnurri-3,ZNF40C human immunodeficiency virus type I enhancer binding protein 3 flag
0
Mm Hs ATF5 0.032 0 0.722 0.026 0.033 2 Enteric neurons Endoderm GI tract activating transcription factor 5 flag
0
Mm Hs STXBP5 0.004 0 0 0.003 0 2 Enteric neurons Endoderm GI tract tomosyn,LLGL3 syntaxin binding protein 5 flag
0
Mm Hs TSHZ1 0.015 0 0 0.005 0 3 Enteric neurons Endoderm GI tract NY-CO-33,SDCCAG33 teashirt zinc finger homeobox 1 Yflag
0
Mm Hs CYTH3 0.01 0 0.778 0.006 0.01 2 Enteric neurons Endoderm GI tract GRP1,ARNO3,cytohesin-3,PSCD3 cytohesin 3 flag
0
Mm Hs RGS3 0.009 0 0 0.023 0 1 Enteric neurons Endoderm GI tract C2PA,FLJ20370,PDZ-RGS3 regulator of G protein signaling 3 flag
0
Mm Hs LIX1 0.01 0 0.722 0.007 0.009 1 Enteric neurons Endoderm GI tract Lft,C5orf11 limb and CNS expressed 1 flag
0
Mm Hs FSTL5 0.008 0 0.5 0.001 0.009 2 Enteric neurons Endoderm GI tract DKFZp566D234,KIAA1263 follistatin like 5 flag

Datasets with computationally identified Enteric neurons

SRA SRS tissue cluster cell type p-value FDR View
SRA667466 SRS3060054 Enteric nervous system 6 Enteric neurons 0.00E+0 1.40E-45 view data
SRA667466 SRS3060054 Enteric nervous system 7 Enteric neurons 2.91E-37 3.09E-34 view data
SRA667466 SRS3060054 Enteric nervous system 10 Enteric neurons 4.26E-27 3.02E-24 view data
SRA667466 SRS3060061 Enteric nervous system 7 Enteric neurons 0.00E+0 0.00E+0 view data
SRA667466 SRS3060061 Enteric nervous system 9 Enteric neurons 3.49E-19 1.85E-16 view data
SRA667466 SRS3060061 Enteric nervous system 10 Enteric neurons 5.61E-40 7.44E-37 view data
SRA667466 SRS3060061 Enteric nervous system 12 Enteric neurons 4.77E-33 4.22E-30 view data
SRA667466 SRS3060060 Enteric nervous system 7 Enteric neurons 0.00E+0 0.00E+0 view data
SRA667466 SRS3060060 Enteric nervous system 8 Enteric neurons 5.93E-21 3.93E-18 view data
SRA667466 SRS3060060 Enteric nervous system 9 Enteric neurons 6.01E-41 5.32E-38 view data
SRA667466 SRS3060060 Enteric nervous system 10 Enteric neurons 1.40E-45 1.97E-42 view data
SRA667466 SRS3060058 Sympathetic nervous system 7 Enteric neurons 7.97E-12 3.91E-9 view data
SRA667466 SRS3060058 Sympathetic nervous system 10 Enteric neurons 1.40E-16 2.71E-13 view data
SRA667466 SRS3060058 Sympathetic nervous system 12 Enteric neurons 8.73E-17 2.71E-13 view data
SRA667466 SRS3060056 Enteric nervous system 7 Enteric neurons 6.95E-41 1.85E-37 view data
SRA667466 SRS3060056 Enteric nervous system 9 Enteric neurons 1.20E-35 1.59E-32 view data
SRA667466 SRS3060056 Enteric nervous system 10 Enteric neurons 5.48E-17 2.91E-14 view data
SRA667466 SRS3060056 Enteric nervous system 11 Enteric neurons 1.16E-33 1.03E-30 view data