Cell type gene expression markers


This is a list of gene expression markers are used to define cell types. Green rows indicate canonical markers (classical markers used to define the cell type).

Summary: 8286 associations (178 cell types, 4679 gene symbols, 29 tissues); Last updated: 27/03/2020 10:44:00 CET

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Gene expression markers for Immature neurons

Vote(s) Species Official gene symbol UI Sensitivity (human) Sensitivity (mouse) Specificity (human) Specificity (mouse) Marker count Cell type Germ layer Organ Aliases Product description Disease Action
3
Mm Hs NEUROG2 0.016 0 0 0.001 0.02 3 Immature neurons Ectoderm Brain Atoh4,Math4A,ngn-2,bHLHa8,NGN2 neurogenin 2 flag
1
Mm Hs TBR1 0.018 0 0 0.001 0 3 Immature neurons Ectoderm Brain T-box, brain 1 flag
1
Mm Hs EPHA3 0.018 0 0 0.001 0.023 1 Immature neurons Ectoderm Brain HEK,HEK4,ETK1 EPH receptor A3 flag
0
Mm Hs YY2 0.001 0 0 0.003 0 1 Immature neurons Ectoderm Brain ZNF631 YY2 transcription factor flag
0
Mm Hs ICAM5 0.006 0 0 0 0.007 2 Immature neurons Ectoderm Brain TLCN intercellular adhesion molecule 5 flag
0
Mm Hs FOXD2 0.001 0 0 0.003 0.001 1 Immature neurons Ectoderm Brain FREAC9,FKHL17 forkhead box D2 flag
0
Mm Hs SLC6A5 0 0 0 0 0 1 Immature neurons Ectoderm Brain solute carrier family 6 member 5 Yflag
0
Mm Hs BCL2 0.043 0 0 0.002 0.052 4 Immature neurons Ectoderm Brain Bcl-2,PPP1R50 BCL2, apoptosis regulator flag
0
Mm Hs NF1 0.029 0 0 0.035 0.029 1 Immature neurons Ectoderm Brain neurofibromin 1 Yflag
0
Mm Hs SYN1 0.028 0 0 0.001 0 2 Immature neurons Ectoderm Brain synapsin I Yflag
0
Mm Hs NEUROD1 0.038 0 1 0.023 0.043 8 Immature neurons Ectoderm Brain BETA2,BHF-1,NeuroD,bHLHa3,MODY6,NEUROD neuronal differentiation 1 Yflag
0
Mm Hs CREB1 0.016 0 0 0.041 0.01 1 Immature neurons Ectoderm Brain cAMP responsive element binding protein 1 Yflag
0
Mm Hs NOTCH1 0.007 0 0 0.005 0.008 5 Immature neurons Ectoderm Brain TAN1 notch 1 Yflag
0
Mm Hs NOTCH3 0.02 0 0 0.014 0.022 8 Immature neurons Ectoderm Brain CASIL,CADASIL notch 3 Yflag
0
Mm Hs SLC1A1 0.013 0 0 0.002 0 3 Immature neurons Ectoderm Brain EAAC1,EAAT3 solute carrier family 1 member 1 Yflag
0
Mm Hs EPHA7 0.008 0 1 0.008 0.008 1 Immature neurons Ectoderm Brain Hek11 EPH receptor A7 flag
0
Mm Hs HIVEP2 0.055 0 1 0.003 0.068 3 Immature neurons Ectoderm Brain MBP-2,HIV-EP2,MIBP1,ZAS2,Schnurri-2,ZNF40B human immunodeficiency virus type I enhancer binding protein 2 flag
0
Mm Hs PCLO 0.039 0 0 0.005 0.046 2 Immature neurons Ectoderm Brain KIAA0559,DKFZp779G1236,ACZ piccolo presynaptic cytomatrix protein Yflag
0
Mm Hs CUX2 0.024 0 0 0 0.03 3 Immature neurons Ectoderm Brain KIAA0293,CDP2,CUTL2 cut like homeobox 2 flag
0
Mm Hs SLC12A5 0.048 0 0 0.004 0 4 Immature neurons Ectoderm Brain KIAA1176,KCC2 solute carrier family 12 member 5 Yflag
0
Mm Hs POMC 0.008 0 0 0.024 0.005 3 Immature neurons Ectoderm Brain POC,ACTH,NPP,LPH proopiomelanocortin Yflag
0
Mm Hs STIM2 0.036 0 0 0.013 0 1 Immature neurons Ectoderm Brain stromal interaction molecule 2 flag
0
Mm Hs RAX 0.006 0 0 0 0 4 Immature neurons Ectoderm Brain RX retina and anterior neural fold homeobox Yflag
0
Mm Hs CUL5 0.057 0 0 0.029 0.062 1 Immature neurons Ectoderm Brain VACM-1 cullin 5 flag
0
Mm Hs ROBO1 0.006 0 0 0.007 0 1 Immature neurons Ectoderm Brain DUTT1,FLJ21882,SAX3 roundabout guidance receptor 1 flag
0
Mm Hs FUT9 0.039 0 1 0.002 0.048 3 Immature neurons Ectoderm Brain Fuc-TIX fucosyltransferase 9 flag
0
Mm Hs PROX1 0.028 0 1 0.011 0.032 8 Immature neurons Ectoderm Brain prospero homeobox 1 flag
0
Mm Hs NTRK3 0.044 0 1 0.009 0.053 1 Immature neurons Ectoderm Brain TRKC neurotrophic receptor tyrosine kinase 3 flag
0
Mm Hs RND2 0.044 0 0 0.021 0 1 Immature neurons Ectoderm Brain Rho7,RhoN,ARHN Rho family GTPase 2 flag
0
Mm Hs FEZF2 0.008 0 0 0.001 0.01 2 Immature neurons Ectoderm Brain FLJ10142,FKSG36,TOF,FEZL,Zfp312,ZNF312 FEZ family zinc finger 2 flag
0
Mm Hs SOX5 0.009 0 0 0.02 0 1 Immature neurons Ectoderm Brain L-SOX5,MGC35153 SRY-box 5 Yflag
-1
Mm Hs RBFOX3 0.04 0 0 0.011 0 2 Immature neurons Ectoderm Brain FOX-3,NeuN,HRNBP3 RNA binding fox-1 homolog 3 flag
-1
Mm Hs NES 0.048 0 0 0.051 0.044 2 Immature neurons Ectoderm Brain FLJ21841 nestin flag
-1
Mm Hs ASCL1 0.007 0 0 0.005 0.007 3 Immature neurons Ectoderm Brain HASH1,bHLHa46 achaete-scute family bHLH transcription factor 1 Yflag
-1
Mm Hs NTRK1 0.004 0 0 0 0.005 4 Immature neurons Ectoderm Brain TRKA,MTC neurotrophic receptor tyrosine kinase 1 Yflag
-1
Mm Hs LHX6 0.011 0 0 0.004 0.013 2 Immature neurons Ectoderm Brain LHX6.1 LIM homeobox 6 flag
-1
Mm Hs PAX6 0.049 0 0 0.014 0.059 8 Immature neurons Ectoderm Brain D11S812E,AN2 paired box 6 Yflag
-1
Mm Hs SSTR2 0.028 0 0 0.012 0 3 Immature neurons Ectoderm Brain somatostatin receptor 2 flag

Datasets with computationally identified Immature neurons

SRA SRS tissue cluster cell type p-value FDR View
SRA675945 SRS3100154 Hippocampus 4 Immature neurons 3.47E-5 3.55E-3 view data