Cell type gene expression markers


This is a list of gene expression markers are used to define cell types. Green rows indicate canonical markers (classical markers used to define the cell type).

Summary: 8286 associations (178 cell types, 4679 gene symbols, 29 tissues); Last updated: 27/03/2020 10:44:00 CET

Filter

get tsv file add marker
Description: The collecting ducts are composed of principal cells and intercalated cells.

Gene expression markers for Intercalated cells

Vote(s) Species Official gene symbol UI Sensitivity (human) Sensitivity (mouse) Specificity (human) Specificity (mouse) Marker count Cell type Germ layer Organ Aliases Product description Disease Action
1
Mm Hs RHCG 0.002 0 0 0.002 0 2 Intercalated cells Mesoderm Kidney RHGK,PDRC2,SLC42A3,C15orf6 Rh family C glycoprotein flag
0
Mm Hs ADGRF5 0.047 0 0.556 0.018 0.054 3 Intercalated cells Mesoderm Kidney DKFZp564O1923,KIAA0758,GPR116 adhesion G protein-coupled receptor F5 flag
0
Mm Hs FOXI1 0.001 0 0.833 0 0 2 Intercalated cells Mesoderm Kidney FREAC6,FKHL10 forkhead box I1 Yflag
0
Mm Hs JAG1 0.027 0 0.111 0.024 0.028 3 Intercalated cells Mesoderm Kidney AHD,AWS,HJ1,CD339,AGS,JAGL1 jagged 1 Yflag
0
Mm Hs INSRR 0.001 0 0.278 0 0 2 Intercalated cells Mesoderm Kidney IRR insulin receptor related receptor flag
0
Mm Hs AP1S3 0.003 0 0 0.003 0.003 2 Intercalated cells Mesoderm Kidney adaptor related protein complex 1 subunit sigma 3 Yflag
0
Mm Hs P2RY14 0.012 0 0 0.003 0.014 3 Intercalated cells Mesoderm Kidney KIAA0001,GPR105 purinergic receptor P2Y14 flag
0
Mm Hs DMRT2 0.001 0 0 0 0.001 1 Intercalated cells Mesoderm Kidney doublesex and mab-3 related transcription factor 2 flag
0
Mm Hs RHBG 0.002 0 0 0 0 2 Intercalated cells Mesoderm Kidney SLC42A2 Rh family B glycoprotein (gene/pseudogene) flag
0
Mm Hs CLCNKA 0 0 0 0 0 2 Intercalated cells Mesoderm Kidney hClC-Ka chloride voltage-gated channel Ka Yflag
0
Mm Hs AVPR1A 0.001 0 0 0 0.001 1 Intercalated cells Mesoderm Kidney AVPR1 arginine vasopressin receptor 1A flag
0
Mm Hs FXYD2 0.025 0 1 0.004 0.029 6 Intercalated cells Mesoderm Kidney MGC12372,ATP1G1,HOMG2 FXYD domain containing ion transport regulator 2 Yflag
0
Mm Hs EGF 0.002 0 0 0 0.002 2 Intercalated cells Mesoderm Kidney epidermal growth factor Yflag
0
Mm Hs TMEM213 0.005 0 0 0.001 0 2 Intercalated cells Mesoderm Kidney transmembrane protein 213 flag
0
Mm Hs OXGR1 0.001 0 0.778 0 0 1 Intercalated cells Mesoderm Kidney P2RY15,P2Y15,aKGR,GPR99,GPR80 oxoglutarate receptor 1 flag
0
Mm Hs ATP6V0D2 0.007 0 0.944 0 0.007 1 Intercalated cells Mesoderm Kidney FLJ38708,VMA6,ATP6D2 ATPase H+ transporting V0 subunit d2 flag
0
Mm Hs ATP6V1G3 0.001 0 1 0 0 1 Intercalated cells Mesoderm Kidney ATP6G3 ATPase H+ transporting V1 subunit G3 flag
0
Mm Hs ATP6V1C2 0.003 0 0.889 0.001 0.002 1 Intercalated cells Mesoderm Kidney VMA5,ATP6C2 ATPase H+ transporting V1 subunit C2 flag
0
Mm Hs AQP6 0.001 0 0.556 0 0 1 Intercalated cells Mesoderm Kidney AQP2L aquaporin 6 flag
0
Mm Hs SLC4A8 0.007 0 0 0.01 0 1 Intercalated cells Mesoderm Kidney solute carrier family 4 member 8 flag
0
Mm Hs ATP6V1B1 0.002 0 0.889 0.001 0.002 1 Intercalated cells Mesoderm Kidney RTA1B,ATP6B1 ATPase H+ transporting V1 subunit B1 Yflag
0
Mm Hs SLC26A4 0.001 0 0 0.001 0 4 Intercalated cells Mesoderm Kidney PDS,DFNB4 solute carrier family 26 member 4 Yflag
0
Mm Hs SLC4A1 0.009 0 0 0.034 0 2 Intercalated cells Mesoderm Kidney RTA1A,CD233,FR,SW,WR,EPB3,AE1,DI,WD solute carrier family 4 member 1 (Diego blood group) Yflag
0
Mm Hs CLCNKB 0.002 0 1 0 0.002 4 Intercalated cells Mesoderm Kidney hClC-Kb chloride voltage-gated channel Kb Yflag
0
Mm Hs SLC26A11 0 0 0 0.001 0 2 Intercalated cells Mesoderm Kidney solute carrier family 26 member 11 flag

Datasets with computationally identified Intercalated cells

SRA SRS tissue cluster cell type p-value FDR View
SRA635314 SRS2727270 Whole kidney 7 Intercalated cells 1.91E-14 1.00E-11 view data
SRA635314 SRS2727270 Whole kidney 9 Intercalated cells 6.59E-19 5.19E-16 view data
SRA635314 SRS2727267 Whole kidney 8 Intercalated cells 5.74E-11 1.56E-8 view data
SRA635314 SRS2727267 Whole kidney 11 Intercalated cells 4.45E-15 1.66E-12 view data
SRA635314 SRS2727267 Whole kidney 15 Intercalated cells 3.73E-17 1.59E-14 view data
SRA635314 SRS2727265 Whole kidney 11 Intercalated cells 1.71E-15 9.34E-13 view data
SRA635314 SRS2727265 Whole kidney 14 Intercalated cells 1.18E-16 8.32E-14 view data
SRA635314 SRS2727268 Whole kidney 7 Intercalated cells 1.57E-16 8.25E-14 view data
SRA635314 SRS2727268 Whole kidney 8 Intercalated cells 1.06E-7 2.30E-5 view data
SRA635314 SRS2727271 Whole kidney 10 Intercalated cells 7.28E-15 3.48E-12 view data
SRA635314 SRS2727271 Whole kidney 12 Intercalated cells 9.78E-18 5.45E-15 view data
SRA635314 SRS2727266 Whole kidney 11 Intercalated cells 1.58E-13 4.65E-11 view data
SRA635314 SRS2727266 Whole kidney 14 Intercalated cells 3.57E-17 2.09E-14 view data
SRA662115 SRS2998545 Kidney 7 Intercalated cells 3.67E-10 8.56E-8 view data
SRA638923 SRS2797071 Kidney 7 Intercalated cells 9.81E-12 3.68E-9 view data
SRA638923 SRS2797071 Kidney 8 Intercalated cells 2.20E-14 1.24E-11 view data
SRA635314 SRS2727269 Whole kidney 7 Intercalated cells 2.71E-13 1.15E-10 view data
SRA635314 SRS2727269 Whole kidney 13 Intercalated cells 3.60E-17 1.90E-14 view data