Cell type gene expression markers


This is a list of gene expression markers are used to define cell types. Green rows indicate canonical markers (classical markers used to define the cell type).

Summary: 8286 associations (178 cell types, 4679 gene symbols, 29 tissues); Last updated: 27/03/2020 10:44:00 CET

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Gene expression markers for Loop of Henle cells

Vote(s) Species Official gene symbol UI Sensitivity (human) Sensitivity (mouse) Specificity (human) Specificity (mouse) Marker count Cell type Germ layer Organ Aliases Product description Disease Action
4
Mm Hs ARC 0.005 0 0 0.004 0.006 1 Loop of Henle cells Mesoderm Kidney KIAA0278,Arg3.1 activity regulated cytoskeleton associated protein flag
0
Mm Hs PCSK9 0.005 0 0 0 0.006 2 Loop of Henle cells Mesoderm Kidney NARC-1,FH3,HCHOLA3 proprotein convertase subtilisin/kexin type 9 Yflag
0
Mm Hs CLDN16 0 0 0 0 0 1 Loop of Henle cells Mesoderm Kidney PCLN1,HOMG3 claudin 16 Yflag
0
Mm Hs GEM 0.038 1 0 0.036 0.04 3 Loop of Henle cells Mesoderm Kidney GTP binding protein overexpressed in skeletal muscle flag
0
Mm Hs FGA 0.005 0 0 0.017 0.002 2 Loop of Henle cells Mesoderm Kidney fibrinogen alpha chain Yflag
0
Mm Hs PLA2G7 0.048 0 0 0.012 0.056 2 Loop of Henle cells Mesoderm Kidney LDL-PLA2 phospholipase A2 group VII Yflag
0
Mm Hs THBS1 0.04 1 0 0.052 0 4 Loop of Henle cells Mesoderm Kidney TSP1,THBS,TSP,THBS-1,TSP-1 thrombospondin 1 flag
0
Mm Hs ENC1 0.073 0 0 0.02 0.085 1 Loop of Henle cells Mesoderm Kidney PIG10,ENC-1,TP53I10,KLHL37,NRPB ectodermal-neural cortex 1 flag
0
Mm Hs SPSB1 0.006 0 0 0.003 0 1 Loop of Henle cells Mesoderm Kidney SSB-1 splA/ryanodine receptor domain and SOCS box containing 1 flag
0
Mm Hs ARID5A 0.017 0 0 0.025 0.015 1 Loop of Henle cells Mesoderm Kidney MRF-1,RP11-363D14 AT-rich interaction domain 5A flag
0
Mm Hs CD40 0.012 0 0 0.013 0.011 10 Loop of Henle cells Mesoderm Kidney Bp50,TNFRSF5 CD40 molecule Yflag
0
Mm Hs SLC14A2 0.005 0 0 0 0 1 Loop of Henle cells Mesoderm Kidney HUT2 solute carrier family 14 member 2 flag
0
Mm Hs NRGN 0.031 0 0 0.011 0.035 6 Loop of Henle cells Mesoderm Kidney neurogranin flag
0
Mm Hs RNF182 0.03 0 0 0 0 1 Loop of Henle cells Mesoderm Kidney MGC33993 ring finger protein 182 flag
0
Mm Hs CXCL1 0.032 1 0 0.045 0.031 8 Loop of Henle cells Mesoderm Kidney SCYB1,GROa,MGSA-a,NAP-3,MGSA,GRO1,FSP C-X-C motif chemokine ligand 1 flag
0
Mm Hs NEK6 0.027 0 0 0.027 0.024 1 Loop of Henle cells Mesoderm Kidney SID6-1512 NIMA related kinase 6 flag
0
Mm Hs CDKN1C 0.097 0 0 0.047 0.109 3 Loop of Henle cells Mesoderm Kidney P57,BWCR,BWS cyclin dependent kinase inhibitor 1C Yflag
0
Mm Hs CALCRL 0.017 0 0 0.025 0.016 3 Loop of Henle cells Mesoderm Kidney CGRPR,CRLR calcitonin receptor like receptor flag
0
Mm Hs KCNT1 0.002 0 0 0 0.002 1 Loop of Henle cells Mesoderm Kidney KCa4.1,KIAA1422,SLACK,Slo2.2 potassium sodium-activated channel subfamily T member 1 Yflag
0
Mm Hs PTGS2 0.009 1 0 0.013 0.008 4 Loop of Henle cells Mesoderm Kidney prostaglandin-endoperoxide synthase 2 flag
0
Mm Hs IRX2 0.012 0 0 0.006 0.013 2 Loop of Henle cells Mesoderm Kidney iroquois homeobox 2 flag
0
Mm Hs PPP1R1B 0.026 0 0 0.016 0.029 3 Loop of Henle cells Mesoderm Kidney DARPP-32,FLJ20940 protein phosphatase 1 regulatory inhibitor subunit 1B flag
0
Mm Hs LIPG 0.003 0 0 0.002 0.003 1 Loop of Henle cells Mesoderm Kidney EDL lipase G, endothelial type flag
0
Mm Hs TNNI1 0.009 0 0 0.009 0 3 Loop of Henle cells Mesoderm Kidney troponin I1, slow skeletal type flag
0
Mm Hs LRRC66 0 0 0 0 0 2 Loop of Henle cells Mesoderm Kidney leucine rich repeat containing 66 flag
0
Mm Hs IGF1 0.044 0 0 0.003 0.054 4 Loop of Henle cells Mesoderm Kidney IGF1A,IGFI,IGF-I,IGF insulin like growth factor 1 Yflag
0
Mm Hs ADAMTS5 0.016 0 0 0.014 0.017 4 Loop of Henle cells Mesoderm Kidney ADMP-2,ADAMTS11 ADAM metallopeptidase with thrombospondin type 1 motif 5 flag
0
Mm Hs CLCNKA 0 0 0 0 0 2 Loop of Henle cells Mesoderm Kidney hClC-Ka chloride voltage-gated channel Ka Yflag
0
Mm Hs DEFB1 0.009 0 0 0.026 0.005 6 Loop of Henle cells Mesoderm Kidney HBD-1,DEFB-1,DEFB101,HBD1,BD1,MGC51822 defensin beta 1 flag
0
Mm Hs SLC12A1 0.001 0 0 0.001 0 3 Loop of Henle cells Mesoderm Kidney NKCC2 solute carrier family 12 member 1 Yflag
0
Mm Hs CLDN19 0.001 0 0 0.001 0.001 2 Loop of Henle cells Mesoderm Kidney claudin 19 Yflag
0
Mm Hs CLDN10 0.028 0 0 0.024 0.03 3 Loop of Henle cells Mesoderm Kidney OSP-L,CPETRL3 claudin 10 flag
0
Mm Hs AQP1 0.037 0 0 0.018 0.042 12 Loop of Henle cells Mesoderm Kidney CHIP28,CO aquaporin 1 (Colton blood group) Yflag
0
Mm Hs FABP4 0.028 0 0 0.01 0.033 10 Loop of Henle cells Mesoderm Kidney A-FABP,aP2 fatty acid binding protein 4 flag
0
Mm Hs UMOD 0 0 0 0 0 2 Loop of Henle cells Mesoderm Kidney uromodulin Yflag
0
Mm Hs RGS5 0.043 NA NA NA NA 6 Loop of Henle cells Mesoderm Kidney regulator of G protein signaling 5 Yflag
0
Mm Hs COX4I2 0.018 0 0 0.007 0.021 3 Loop of Henle cells Mesoderm Kidney COXIV-2,COX4B,dJ857M17.2,COX4-2,COX4L2 cytochrome c oxidase subunit 4I2 Yflag
0
Mm Hs CYP4B1 0.018 0 0 0.013 0.019 3 Loop of Henle cells Mesoderm Kidney cytochrome P450 family 4 subfamily B member 1 flag
0
Mm Hs PARVB 0.036 0 0 0.05 0.033 1 Loop of Henle cells Mesoderm Kidney CGI-56 parvin beta flag
0
Mm Hs SH3RF2 0.008 0 0 0.025 0 1 Loop of Henle cells Mesoderm Kidney FLJ23654,RNF158,Hepp1,POSHER,PPP1R39 SH3 domain containing ring finger 2 flag
0
Mm Hs HEY2 0.004 0 0 0.015 0.002 3 Loop of Henle cells Mesoderm Kidney bHLHb32,HERP1,HESR2 hes related family bHLH transcription factor with YRPW motif 2 flag
0
Mm Hs NKAIN4 0.036 0 0 0.009 0.042 3 Loop of Henle cells Mesoderm Kidney bA261N11.2,FAM77A,C20orf58 sodium/potassium transporting ATPase interacting 4 flag
-1
Mm Hs CLDN8 0.004 0 0 0.001 0.004 2 Loop of Henle cells Mesoderm Kidney claudin 8 flag
-1
Mm Hs TRPM7 0.031 0 0 0.006 0 2 Loop of Henle cells Mesoderm Kidney CHAK1,LTRPC7,TRP-PLIK transient receptor potential cation channel subfamily M member 7 Yflag
-1
Mm Hs CDH6 0.01 0 0 0.018 0.008 1 Loop of Henle cells Mesoderm Kidney cadherin 6 flag
-1
Mm Hs LCN2 0.043 0 0 0.057 0.042 9 Loop of Henle cells Mesoderm Kidney NGAL,24p3 lipocalin 2 flag
-1
Mm Hs DRAM1 0.012 0 0 0.017 0.011 1 Loop of Henle cells Mesoderm Kidney FLJ11259,DRAM DNA damage regulated autophagy modulator 1 flag
-1
Mm Hs DKK1 0.006 0 0 0.025 0.001 2 Loop of Henle cells Mesoderm Kidney SK,DKK-1 dickkopf WNT signaling pathway inhibitor 1 flag
-1
Mm Hs DACH1 0.013 0 0 0.028 0.011 3 Loop of Henle cells Mesoderm Kidney DACH dachshund family transcription factor 1 flag
-1
Mm Hs SLC12A3 0.001 0 0 0 0 2 Loop of Henle cells Mesoderm Kidney NCCT solute carrier family 12 member 3 Yflag
-1
Mm Hs SLC11A2 0.007 0 0 0.007 0 3 Loop of Henle cells Mesoderm Kidney DCT1,NRAMP2 solute carrier family 11 member 2 Yflag
-1
Mm Hs ARVCF 0.005 0 0 0 0.006 1 Loop of Henle cells Mesoderm Kidney ARVCF, delta catenin family member flag
-2
Mm Hs SMARCD3 0.004 0 0 0.017 0 1 Loop of Henle cells Mesoderm Kidney BAF60C,CRACD3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 flag

Datasets with computationally identified Loop of Henle cells

SRA SRS tissue cluster cell type p-value FDR View
SRA703206 SRS3296613 Colon (Ulcerative Colitis) 7 Loop of Henle cells 6.59E-4 4.31E-2 view data