Cell type gene expression markers


This is a list of gene expression markers are used to define cell types. Green rows indicate canonical markers (classical markers used to define the cell type).

Summary: 8286 associations (178 cell types, 4679 gene symbols, 29 tissues); Last updated: 27/03/2020 10:44:00 CET

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Gene expression markers for Luminal epithelial cells

Vote(s) Species Official gene symbol UI Sensitivity (human) Sensitivity (mouse) Specificity (human) Specificity (mouse) Marker count Cell type Germ layer Organ Aliases Product description Disease Action
2
Mm Hs KRT18 0.126 0.8 1 0.235 0.092 4 Luminal epithelial cells Ectoderm Mammary gland keratin 18 Yflag
1
Mm Hs MUC1 0.016 0.667 0 0.03 0.013 8 Luminal epithelial cells Ectoderm Mammary gland CD227,PEM,ADMCKD,ADMCKD1,MCKD,MCKD1 mucin 1, cell surface associated Yflag
1
Mm Hs CEBPD 0.122 0.867 0.308 0.183 0.108 1 Luminal epithelial cells Ectoderm Mammary gland CRP3,CELF,C/EBP-delta,NF-IL6-beta CCAAT enhancer binding protein delta flag
1
Mm Hs KRT8 0.12 0.933 1 0.208 0.092 5 Luminal epithelial cells Ectoderm Mammary gland K8,CK8,CYK8,K2C8,KO keratin 8 Yflag
1
Mm Hs CD9 0.344 0.933 1 0.268 0.366 6 Luminal epithelial cells Ectoderm Mammary gland BA2,P24,TSPAN29,MRP-1,MIC3 CD9 molecule flag
0
Mm Hs AQP3 0.025 0.867 0.462 0.067 0.016 8 Luminal epithelial cells Ectoderm Mammary gland GIL aquaporin 3 (Gill blood group) Yflag
0
Mm Hs PIP 0.001 0.267 0 0.001 0.001 3 Luminal epithelial cells Ectoderm Mammary gland GCDFP-15,GCDFP15,GPIP4 prolactin induced protein flag
0
Mm Hs ATP7B 0.002 0 0 0.002 0.003 2 Luminal epithelial cells Ectoderm Mammary gland WND ATPase copper transporting beta Yflag
0
Mm Hs HIF1A 0.089 0.533 0.769 0.1 0.085 4 Luminal epithelial cells Ectoderm Mammary gland MOP1,HIF-1alpha,PASD8,HIF1,bHLHe78 hypoxia inducible factor 1 subunit alpha flag
0
Mm Hs FGFR4 0.003 0 0 0.003 0.002 3 Luminal epithelial cells Ectoderm Mammary gland JTK2,CD334 fibroblast growth factor receptor 4 Yflag
0
Mm Hs DDR1 0.051 0.467 0.231 0.043 0.055 1 Luminal epithelial cells Ectoderm Mammary gland RTK6,CD167,NTRK4,PTK3A,EDDR1 discoidin domain receptor tyrosine kinase 1 flag
0
Mm Hs PGR 0.003 0 1 0.007 0.001 3 Luminal epithelial cells Ectoderm Mammary gland NR3C3 progesterone receptor Yflag
0
Mm Hs UXT 0.004 0 0 0.008 0 1 Luminal epithelial cells Ectoderm Mammary gland ART-27,STAP1 ubiquitously expressed prefoldin like chaperone flag
0
Mm Hs PTH1R 0.019 0 0 0.005 0.023 5 Luminal epithelial cells Ectoderm Mammary gland PTHR1 parathyroid hormone 1 receptor Yflag
0
Mm Hs AR 0.013 0 0 0.002 0.016 6 Luminal epithelial cells Ectoderm Mammary gland AIS,NR3C4,SMAX1,HUMARA,DHTR,SBMA androgen receptor Yflag
0
Hs SERPINA1 0.016 0.067 0 0.085 0 4 Luminal epithelial cells Ectoderm Mammary gland AAT,A1A,PI1,alpha-1-antitrypsin,A1AT,alpha1AT,PI serpin family A member 1 Yflag
0
Mm Hs ATP2C2 0.001 0 0 0.004 0.001 1 Luminal epithelial cells Ectoderm Mammary gland KIAA0703,SPCA2 ATPase secretory pathway Ca2+ transporting 2 flag
0
Mm Hs WNT5A 0.015 0 0 0.008 0 3 Luminal epithelial cells Ectoderm Mammary gland hWNT5A Wnt family member 5A Yflag
0
Mm Hs SLC12A2 0.074 0.067 0 0.05 0 4 Luminal epithelial cells Ectoderm Mammary gland NKCC1,BSC,BSC2,PPP1R141 solute carrier family 12 member 2 flag
0
Mm Hs ESR1 0.004 0 0.538 0.001 0.004 3 Luminal epithelial cells Ectoderm Mammary gland NR3A1,Era,ER-alpha,ESR estrogen receptor 1 Yflag
0
Mm Hs AQP5 0.018 0.4 1 0.04 0.013 4 Luminal epithelial cells Ectoderm Mammary gland aquaporin 5 Yflag
0
Mm Hs RUNX1 0.054 0.133 0 0.031 0 4 Luminal epithelial cells Ectoderm Mammary gland PEBP2A2,AMLCR1,AML1,CBFA2 runt related transcription factor 1 Yflag
0
Mm Hs CDH1 0.056 0.533 1 0.039 0.056 15 Luminal epithelial cells Ectoderm Mammary gland uvomorulin,CD324,UVO cadherin 1 Yflag
0
Mm Hs ANPEP 0.015 0 0 0.013 0.017 7 Luminal epithelial cells Ectoderm Mammary gland gp150,CD13,PEPN alanyl aminopeptidase, membrane flag
0
Hs KLK3 0.002 0.267 0 0.009 0 3 Luminal epithelial cells Ectoderm Mammary gland kallikrein related peptidase 3 flag
0
Hs SERPINB4 0.001 0.467 0 0.004 0 1 Luminal epithelial cells Ectoderm Mammary gland PI11,LEUPIN,SCCA-2,SCCA2 serpin family B member 4 flag
0
Mm Hs FGG 0.007 0 0.769 0.013 0.005 2 Luminal epithelial cells Ectoderm Mammary gland fibrinogen gamma chain Yflag
0
Hs ANKRD30A 0.001 0 0 0.004 0 1 Luminal epithelial cells Ectoderm Mammary gland NY-BR-1 ankyrin repeat domain 30A flag
0
Mm Hs SLPI 0.048 0.867 0 0.091 0 3 Luminal epithelial cells Ectoderm Mammary gland HUSI-I,BLPI,HUSI,WAP4,WFDC4 secretory leukocyte peptidase inhibitor flag
0
Mm Hs PROM1 0.021 0 0.769 0.007 0.024 6 Luminal epithelial cells Ectoderm Mammary gland AC133,CD133,RP41,CORD12,PROML1,STGD4 prominin 1 Yflag
0
Mm Hs KRT19 0.088 0.667 1 0.168 0.065 4 Luminal epithelial cells Ectoderm Mammary gland K19,CK19,K1CS,MGC15366 keratin 19 flag
0
Mm Hs SYTL2 0.019 0.067 0 0.005 0 1 Luminal epithelial cells Ectoderm Mammary gland FLJ20163,FLJ21219,KIAA1597,exophilin-4,CHR11SYT,SLP2,SGA72M,MGC102768,PPP1R151 synaptotagmin like 2 flag
0
Mm Hs CD74 0.169 0.733 0.077 0.362 0.125 5 Luminal epithelial cells Ectoderm Mammary gland DHLAG CD74 molecule flag
0
Mm Hs AGR2 0.024 0.933 0 0.069 0.013 7 Luminal epithelial cells Ectoderm Mammary gland XAG-2,HAG-2,PDIA17 anterior gradient 2, protein disulphide isomerase family member flag
0
Mm Hs LTF 0.016 0.067 0 0.006 0.018 4 Luminal epithelial cells Ectoderm Mammary gland HLF2 lactotransferrin flag
0
Mm Hs SAA2 0.006 0.267 0 0.037 0 1 Luminal epithelial cells Ectoderm Mammary gland serum amyloid A2 flag
0
Mm Hs KRT23 0.014 0.333 0 0.056 0.006 3 Luminal epithelial cells Ectoderm Mammary gland K23,DKFZP434G032,HAIK1,CK23,MGC26158 keratin 23 flag
0
Mm Hs FGFR2 0.034 0 1 0.016 0.038 3 Luminal epithelial cells Ectoderm Mammary gland CEK3,TK14,TK25,ECT1,K-SAM,CD332,KGFR,BEK,JWS fibroblast growth factor receptor 2 Yflag
0
Hs SERPINB3 0.001 0.533 0 0.004 0 1 Luminal epithelial cells Ectoderm Mammary gland T4-A,HsT1196,SCC serpin family B member 3 flag
0
Mm Hs WFDC2 0.056 0.733 0 0.091 0 3 Luminal epithelial cells Ectoderm Mammary gland HE4,WAP5,dJ461P17.6,EDDM4 WAP four-disulfide core domain 2 flag
0
Mm Hs LCN2 0.043 0.8 0.154 0.053 0.042 9 Luminal epithelial cells Ectoderm Mammary gland NGAL,24p3 lipocalin 2 flag
0
Mm Hs BTG1 0.333 0.867 1 0.667 0.258 1 Luminal epithelial cells Ectoderm Mammary gland APRO2 BTG anti-proliferation factor 1 flag
0
Mm Hs CLDN4 0.047 0.8 1 0.125 0.028 5 Luminal epithelial cells Ectoderm Mammary gland CPE-R,WBSCR8,hCPE-R,CPETR,CPETR1 claudin 4 flag
0
Mm Hs ANXA1 0.161 0.8 1 0.358 0.118 2 Luminal epithelial cells Ectoderm Mammary gland ANX1,LPC1 annexin A1 flag
0
Mm Hs HMGA1 0.084 0.733 0.154 0.293 0.027 2 Luminal epithelial cells Ectoderm Mammary gland HMGIY high mobility group AT-hook 1 Yflag
0
Mm Hs STC2 0.01 0.067 0 0.012 0 1 Luminal epithelial cells Ectoderm Mammary gland STC-2 stanniocalcin 2 flag
0
Mm Hs AREG 0.031 0.2 1 0.1 0.014 2 Luminal epithelial cells Ectoderm Mammary gland SDGF,AREGB amphiregulin flag
0
Mm Hs TNFSF10 0.014 0.6 0 0.062 0 2 Luminal epithelial cells Ectoderm Mammary gland TRAIL,Apo-2L,TL2,CD253 TNF superfamily member 10 flag

Datasets with computationally identified Luminal epithelial cells

SRA SRS tissue cluster cell type p-value FDR View
SRA742961 SRS3565195 Prostate 4 Luminal epithelial cells 8.73E-4 4.36E-2 view data
SRA742961 SRS3565195 Prostate 13 Luminal epithelial cells 2.33E-5 2.62E-3 view data
SRA640325 SRS2769051 Lung proximal airway stromal cells 9 Luminal epithelial cells 8.43E-7 1.48E-4 view data
SRA653146 SRS2874271 Fat 23 Luminal epithelial cells 4.80E-4 1.62E-2 view data
SRA691388 SRS3173555 Breast epithelium 7 Luminal epithelial cells 2.22E-9 1.03E-6 view data
SRA742961 SRS3565204 Prostate 1 Luminal epithelial cells 7.59E-5 7.79E-3 view data
SRA742961 SRS3565204 Prostate 10 Luminal epithelial cells 4.13E-7 1.58E-4 view data
SRA653146 SRS3044257 Mammary tissue 6 Luminal epithelial cells 6.98E-5 7.53E-3 view data
SRA625553 SRS2641022 Mammary epithelial cells 1 Luminal epithelial cells 5.97E-5 2.31E-2 view data
SRA625553 SRS2641016 Mammary epithelial cells 0 Luminal epithelial cells 2.56E-4 4.14E-2 view data
SRA625553 SRS2641016 Mammary epithelial cells 7 Luminal epithelial cells 1.02E-5 2.58E-3 view data
SRA742961 SRS3565203 Prostate 9 Luminal epithelial cells 7.26E-8 2.04E-5 view data
SRA625553 SRS2641017 Mammary epithelial cells 0 Luminal epithelial cells 5.14E-5 1.43E-2 view data
SRA625553 SRS2641017 Mammary epithelial cells 1 Luminal epithelial cells 7.58E-5 1.84E-2 view data
SRA605365 SRS2492922 Nasal airway epithelium 0 Luminal epithelial cells 6.30E-6 4.64E-4 view data
SRA605365 SRS2492922 Nasal airway epithelium 1 Luminal epithelial cells 9.61E-5 5.40E-3 view data
SRA605365 SRS2492922 Nasal airway epithelium 2 Luminal epithelial cells 2.71E-5 1.76E-3 view data
SRA605365 SRS2492922 Nasal airway epithelium 3 Luminal epithelial cells 5.17E-4 2.57E-2 view data
SRA605365 SRS2492922 Nasal airway epithelium 7 Luminal epithelial cells 1.03E-6 1.00E-4 view data
SRA729910 SRS3474726 Lung airway epithelial cells 0 Luminal epithelial cells 9.01E-5 4.10E-3 view data
SRA729910 SRS3474726 Lung airway epithelial cells 10 Luminal epithelial cells 1.07E-4 4.77E-3 view data
SRA653146 SRS2874277 Mammary gland 5 Luminal epithelial cells 2.09E-4 1.32E-2 view data
SRA625553 SRS2641023 Mammary epithelial cells 0 Luminal epithelial cells 9.34E-6 2.83E-3 view data
SRA625553 SRS2641023 Mammary epithelial cells 2 Luminal epithelial cells 2.87E-4 3.95E-2 view data
SRA625553 SRS2641023 Mammary epithelial cells 3 Luminal epithelial cells 3.05E-5 7.09E-3 view data
SRA625553 SRS2641023 Mammary epithelial cells 9 Luminal epithelial cells 1.75E-5 4.42E-3 view data
SRA625553 SRS2641023 Mammary epithelial cells 11 Luminal epithelial cells 1.15E-5 3.16E-3 view data
SRA728025 SRS3454424 Colon 2 Luminal epithelial cells 7.18E-4 2.56E-2 view data