Cell type gene expression markers


This is a list of gene expression markers are used to define cell types. Green rows indicate canonical markers (classical markers used to define the cell type).

Summary: 8286 associations (178 cell types, 4679 gene symbols, 29 tissues); Last updated: 27/03/2020 10:44:00 CET

Filter

get tsv file add marker

Gene expression markers for Mammary epithelial cells

Vote(s) Species Official gene symbol UI Sensitivity (human) Sensitivity (mouse) Specificity (human) Specificity (mouse) Marker count Cell type Germ layer Organ Aliases Product description Disease Action
3
Mm Hs ALDH1A3 0.008 0 0.387 0.035 0.003 5 Mammary epithelial cells Mesoderm Mammary gland RALDH3,ALDH6 aldehyde dehydrogenase 1 family member A3 Yflag
1
Mm Hs CSN2 0.004 0 0.71 0 0.004 1 Mammary epithelial cells Mesoderm Mammary gland CASB casein beta flag
1
Mm Hs KRT5 0.019 1 0.032 0.044 0.015 6 Mammary epithelial cells Mesoderm Mammary gland KRT5A,EBS2 keratin 5 Yflag
1
Mm Hs CSN3 0.004 0 0.903 0 0.004 1 Mammary epithelial cells Mesoderm Mammary gland CSN10 casein kappa flag
1
Mm Hs KRT19 0.088 1 1 0.17 0.064 4 Mammary epithelial cells Mesoderm Mammary gland K19,CK19,K1CS,MGC15366 keratin 19 flag
1
Mm Hs KRT18 0.126 1 1 0.237 0.091 4 Mammary epithelial cells Mesoderm Mammary gland keratin 18 Yflag
1
Mm Hs KRT8 0.12 1 1 0.211 0.091 5 Mammary epithelial cells Mesoderm Mammary gland K8,CK8,CYK8,K2C8,KO keratin 8 Yflag
1
Mm Hs KRT7 0.056 1 0.484 0.101 0.047 9 Mammary epithelial cells Mesoderm Mammary gland CK7,K2C7 keratin 7 flag
0
Mm Hs SGMS2 0.017 0 0 0.016 0 2 Mammary epithelial cells Mesoderm Mammary gland MGC26963,SMS2 sphingomyelin synthase 2 flag
0
Mm WFDC18 0.007 NA NA NA NA 2 Mammary epithelial cells Mesoderm Mammary gland WAP four-disulfide core domain 18 flag
0
Mm Hs CLDN4 0.047 1 0.968 0.128 0.027 5 Mammary epithelial cells Mesoderm Mammary gland CPE-R,WBSCR8,hCPE-R,CPETR,CPETR1 claudin 4 flag
0
Mm Hs CSN1S1 0.003 0 0.71 0 0.003 1 Mammary epithelial cells Mesoderm Mammary gland CASA casein alpha s1 flag
0
Mm Hs RARRES1 0.01 0 0 0.034 0 2 Mammary epithelial cells Mesoderm Mammary gland LXNL retinoic acid receptor responder 1 flag
0
Mm Hs KRT17 0.025 1 0.194 0.074 0.015 5 Mammary epithelial cells Mesoderm Mammary gland PCHC1 keratin 17 Yflag
0
Mm Hs NNMT 0.017 0 0 0.061 0.008 4 Mammary epithelial cells Mesoderm Mammary gland nicotinamide N-methyltransferase flag
0
Mm Hs PIEZO1 0.01 0 0.355 0.016 0.008 3 Mammary epithelial cells Mesoderm Mammary gland KIAA0233,FAM38A piezo type mechanosensitive ion channel component 1 Yflag
0
Mm Hs ANO1 0.009 0 0.581 0.001 0.011 2 Mammary epithelial cells Mesoderm Mammary gland TAOS2,FLJ10261,DOG1,ORAOV2,TMEM16A anoctamin 1 flag
0
Mm Hs WNT5B 0.003 0 0 0.002 0 1 Mammary epithelial cells Mesoderm Mammary gland Wnt family member 5B flag
0
Mm Hs NEDD9 0.013 0.5 0.29 0.022 0.011 1 Mammary epithelial cells Mesoderm Mammary gland HEF1,CAS-L,CASS2 neural precursor cell expressed, developmentally down-regulated 9 flag
0
Mm Hs FOXP4 0.01 0 0.097 0.002 0.012 2 Mammary epithelial cells Mesoderm Mammary gland FLJ40908 forkhead box P4 flag
0
Mm Hs LSR 0.026 0 0.129 0.059 0.016 1 Mammary epithelial cells Mesoderm Mammary gland LISCH7,ILDR3 lipolysis stimulated lipoprotein receptor flag
0
Mm Hs LIF 0.002 0 0.097 0.005 0.001 3 Mammary epithelial cells Mesoderm Mammary gland CDF,HILDA LIF, interleukin 6 family cytokine flag
0
Mm Hs STAT3 0.099 0 0 0.15 0 3 Mammary epithelial cells Mesoderm Mammary gland APRF signal transducer and activator of transcription 3 Yflag
0
Mm WAP 0.001 NA NA NA NA 1 Mammary epithelial cells Mesoderm Mammary gland whey acidic protein flag
0
Mm CSN1S2A 0.004 0 0.71 0 0.004 1 Mammary epithelial cells Mesoderm Mammary gland casein alpha s2-like A flag
0
Mm Hs BTN1A1 0.001 0 0.419 0 0 1 Mammary epithelial cells Mesoderm Mammary gland BT,BTN butyrophilin subfamily 1 member A1 flag
0
Mm Hs BTN2A2 0 0 0 0 0 1 Mammary epithelial cells Mesoderm Mammary gland BT2.2,BTN2.2 butyrophilin subfamily 2 member A2 flag
0
Hs BTN3A1 0 0 0 0.001 0 1 Mammary epithelial cells Mesoderm Mammary gland BT3.1,BTF5,CD277,BTN3.1 butyrophilin subfamily 3 member A1 flag
0
Mm Hs MMP14 0.054 0 0.097 0.035 0.057 3 Mammary epithelial cells Mesoderm Mammary gland MT1-MMP matrix metallopeptidase 14 Yflag
0
Mm Hs TOX3 0.017 0 0 0.004 0 2 Mammary epithelial cells Mesoderm Mammary gland CAGF9,TNRC9 TOX high mobility group box family member 3 flag
0
Mm Hs CDH1 0.056 0 0.71 0.042 0.056 15 Mammary epithelial cells Mesoderm Mammary gland uvomorulin,CD324,UVO cadherin 1 Yflag
0
Mm Hs FFAR1 0.002 0 0 0.007 0.002 2 Mammary epithelial cells Mesoderm Mammary gland FFA1R,GPR40 free fatty acid receptor 1 flag
0
Mm Hs PYGO2 0.002 0 0 0 0.003 1 Mammary epithelial cells Mesoderm Mammary gland pygopus family PHD finger 2 flag
0
Mm Hs SERPINB5 0.015 0.5 0 0.02 0 2 Mammary epithelial cells Mesoderm Mammary gland maspin,PI5 serpin family B member 5 flag
0
Mm Hs RUNX2 0.008 0 0 0.009 0 3 Mammary epithelial cells Mesoderm Mammary gland AML3,PEBP2A1,PEBP2aA1,CCD,CBFA1,CCD1 runt related transcription factor 2 Yflag
0
Mm Hs PIP 0.001 0 0.032 0.002 0.001 3 Mammary epithelial cells Mesoderm Mammary gland GCDFP-15,GCDFP15,GPIP4 prolactin induced protein flag
0
Mm Hs CITED1 0.023 0 0.129 0.016 0.024 3 Mammary epithelial cells Mesoderm Mammary gland MSG1 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1 flag
0
Mm Hs IRF6 0.015 0 0.226 0.029 0.013 3 Mammary epithelial cells Mesoderm Mammary gland OFC6,VWS,LPS interferon regulatory factor 6 Yflag
0
Mm Hs SULT1E1 0.002 0 0 0.006 0 3 Mammary epithelial cells Mesoderm Mammary gland STE sulfotransferase family 1E member 1 flag
0
Mm Hs KRT14 0.019 0 0.194 0.02 0.019 7 Mammary epithelial cells Mesoderm Mammary gland EBS3,EBS4 keratin 14 Yflag
0
Mm Hs KDM3A 0.006 0 0.032 0.015 0.005 1 Mammary epithelial cells Mesoderm Mammary gland TSGA,KIAA0742,JHMD2A,JMJD1,JMJD1A lysine demethylase 3A flag
0
Mm Hs SLC30A2 0.001 0 0 0 0 1 Mammary epithelial cells Mesoderm Mammary gland ZNT2 solute carrier family 30 member 2 Yflag
0
Mm Hs PADI2 0.007 0 0 0.008 0.007 2 Mammary epithelial cells Mesoderm Mammary gland KIAA0994,PDI2 peptidyl arginine deiminase 2 flag
0
Mm Hs CLDN1 0.01 0 0.129 0.029 0.005 5 Mammary epithelial cells Mesoderm Mammary gland SEMP1,ILVASC claudin 1 Yflag
0
Mm Hs ABCG2 0.038 0 0.161 0.005 0.046 7 Mammary epithelial cells Mesoderm Mammary gland EST157481,MXR,BCRP,ABCP,CD338 ATP binding cassette subfamily G member 2 (Junior blood group) Yflag
-1
Mm Hs PRLR 0.013 0 0.161 0.011 0.014 6 Mammary epithelial cells Mesoderm Mammary gland prolactin receptor Yflag

Datasets with computationally identified Mammary epithelial cells

SRA SRS tissue cluster cell type p-value FDR View
SRA742961 SRS3565201 Prostate 5 Mammary epithelial cells 8.18E-4 4.85E-2 view data
SRA851241 SRS4388158 Muscle 20 Mammary epithelial cells 7.00E-5 1.25E-2 view data
SRA742961 SRS3565211 Prostate 18 Mammary epithelial cells 4.31E-4 4.52E-2 view data
SRA653146 SRS3044256 Mammary tissue 6 Mammary epithelial cells 1.94E-5 2.17E-3 view data
SRA653146 SRS3044257 Mammary tissue 11 Mammary epithelial cells 2.02E-7 3.13E-5 view data
SRA625553 SRS2641022 Mammary epithelial cells 0 Mammary epithelial cells 2.14E-5 1.03E-2 view data
SRA625553 SRS2641022 Mammary epithelial cells 2 Mammary epithelial cells 6.19E-6 3.99E-3 view data
SRA625553 SRS2641022 Mammary epithelial cells 3 Mammary epithelial cells 3.35E-8 4.54E-5 view data
SRA625553 SRS2641022 Mammary epithelial cells 7 Mammary epithelial cells 1.45E-4 4.69E-2 view data
SRA625553 SRS2641016 Mammary epithelial cells 2 Mammary epithelial cells 1.39E-4 2.47E-2 view data
SRA625553 SRS2641016 Mammary epithelial cells 3 Mammary epithelial cells 5.48E-7 1.95E-4 view data
SRA625553 SRS2641020 Mammary epithelial cells 11 Mammary epithelial cells 8.94E-8 1.25E-5 view data
SRA625553 SRS2641020 Mammary epithelial cells 18 Mammary epithelial cells 4.47E-9 9.22E-7 view data
SRA851241 SRS4388159 Muscle 16 Mammary epithelial cells 1.17E-4 1.84E-2 view data
SRA625553 SRS2641021 Mammary epithelial cells 9 Mammary epithelial cells 1.30E-7 2.07E-5 view data
SRA625553 SRS2641021 Mammary epithelial cells 11 Mammary epithelial cells 4.88E-9 9.84E-7 view data
SRA625553 SRS2641018 Mammary epithelial cells 2 Mammary epithelial cells 9.10E-5 1.20E-2 view data
SRA625553 SRS2641018 Mammary epithelial cells 3 Mammary epithelial cells 4.17E-4 3.80E-2 view data
SRA625553 SRS2641018 Mammary epithelial cells 5 Mammary epithelial cells 1.45E-4 1.67E-2 view data
SRA625553 SRS2641018 Mammary epithelial cells 7 Mammary epithelial cells 3.42E-5 6.10E-3 view data
SRA625553 SRS2641018 Mammary epithelial cells 10 Mammary epithelial cells 9.03E-7 2.47E-4 view data
SRA625553 SRS2641018 Mammary epithelial cells 17 Mammary epithelial cells 8.01E-5 1.14E-2 view data
SRA625553 SRS2641018 Mammary epithelial cells 19 Mammary epithelial cells 4.71E-5 7.29E-3 view data
SRA625553 SRS2641019 Mammary epithelial cells 6 Mammary epithelial cells 9.99E-6 2.13E-3 view data
SRA625553 SRS2641019 Mammary epithelial cells 12 Mammary epithelial cells 9.09E-5 1.28E-2 view data
SRA625553 SRS2641019 Mammary epithelial cells 16 Mammary epithelial cells 9.54E-6 2.13E-3 view data
SRA653146 SRS2874277 Mammary gland 1 Mammary epithelial cells 1.04E-5 1.01E-3 view data
SRA653146 SRS2874277 Mammary gland 12 Mammary epithelial cells 1.20E-6 1.34E-4 view data
SRA625553 SRS2641023 Mammary epithelial cells 1 Mammary epithelial cells 3.73E-5 7.76E-3 view data
SRA625553 SRS2641023 Mammary epithelial cells 4 Mammary epithelial cells 3.85E-5 7.76E-3 view data
SRA625553 SRS2641023 Mammary epithelial cells 6 Mammary epithelial cells 3.41E-9 6.06E-6 view data
SRA625553 SRS2641023 Mammary epithelial cells 8 Mammary epithelial cells 1.47E-4 2.24E-2 view data
SRA625553 SRS2641023 Mammary epithelial cells 14 Mammary epithelial cells 4.01E-9 6.06E-6 view data