Cell type gene expression markers


This is a list of gene expression markers are used to define cell types. Green rows indicate canonical markers (classical markers used to define the cell type).

Summary: 8286 associations (178 cell types, 4679 gene symbols, 29 tissues); Last updated: 27/03/2020 10:44:00 CET

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Gene expression markers for Osteoclasts

Vote(s) Species Official gene symbol UI Sensitivity (human) Sensitivity (mouse) Specificity (human) Specificity (mouse) Marker count Cell type Germ layer Organ Aliases Product description Disease Action
0
Mm Hs EPHB1 0.018 0 0 0.004 0.022 2 Osteoclasts Mesoderm Bone Hek6,EPHT2 EPH receptor B1 flag
0
Mm Hs AQP9 0.003 0 0 0.003 0.003 3 Osteoclasts Mesoderm Bone SSC1,HsT17287 aquaporin 9 flag
0
Mm Hs ONECUT1 0.001 0 0 0 0.001 3 Osteoclasts Mesoderm Bone HNF-6,HNF6,HNF6A one cut homeobox 1 flag
0
Mm Hs ITGB3 0.001 0 1 0 0.001 4 Osteoclasts Mesoderm Bone CD61,GPIIIa,GP3A integrin subunit beta 3 Yflag
0
Mm Hs ITGB5 0.047 0 0 0.015 0.056 4 Osteoclasts Mesoderm Bone integrin subunit beta 5 flag
0
Mm Hs IRAK3 0.003 0 0 0.004 0.003 1 Osteoclasts Mesoderm Bone IRAK-M interleukin 1 receptor associated kinase 3 Yflag
0
Mm Hs ITGA2 0.01 0 0.5 0.045 0.003 6 Osteoclasts Mesoderm Bone CD49b,CD49B integrin subunit alpha 2 Yflag
0
Mm Hs TAS1R3 0 0 0 0 0 4 Osteoclasts Mesoderm Bone T1R3 taste 1 receptor member 3 flag
0
Mm Hs SERPINF1 0.057 0 0 0.106 0 3 Osteoclasts Mesoderm Bone EPC-1,PIG35,PEDF serpin family F member 1 Yflag
0
Mm Hs ITGAV 0.026 0 1 0.022 0.027 3 Osteoclasts Mesoderm Bone CD51,VNRA,MSK8,VTNR integrin subunit alpha V flag
0
Mm Hs ITGB1 0.276 0 1 0.169 0.302 4 Osteoclasts Mesoderm Bone CD29,GPIIA,FNRB,MSK12,MDF2 integrin subunit beta 1 flag
0
Mm Hs P2RY6 0.018 0 0 0.003 0.022 3 Osteoclasts Mesoderm Bone P2Y6 pyrimidinergic receptor P2Y6 flag
0
Mm Hs CCL3 0.036 0 0 0.008 0.043 9 Osteoclasts Mesoderm Bone G0S19-1,LD78ALPHA,MIP-1-alpha,SCYA3 C-C motif chemokine ligand 3 Yflag
0
Mm Hs SLC39A14 0.006 0 0 0.013 0 1 Osteoclasts Mesoderm Bone KIAA0062,NET34,ZIP14 solute carrier family 39 member 14 flag
0
Hs CA2 0.011 0 0 0.065 0 3 Osteoclasts Mesoderm Bone Car2,CA-II,CAII carbonic anhydrase 2 Yflag
0
Mm Hs HIF1A 0.089 0 0 0.102 0.086 4 Osteoclasts Mesoderm Bone MOP1,HIF-1alpha,PASD8,HIF1,bHLHe78 hypoxia inducible factor 1 subunit alpha flag
0
Mm Hs CX3CR1 0.039 0 0 0.002 0.048 5 Osteoclasts Mesoderm Bone CMKDR1,V28,GPR13,CMKBRL1 C-X3-C motif chemokine receptor 1 Yflag
0
Mm Hs ESR1 0.004 0 0 0.001 0.005 3 Osteoclasts Mesoderm Bone NR3A1,Era,ER-alpha,ESR estrogen receptor 1 Yflag
0
Mm Hs EFNB2 0.016 0 0 0.029 0.014 4 Osteoclasts Mesoderm Bone LERK5,Htk-L,HTKL,MGC126226,MGC126227,MGC126228,EPLG5 ephrin B2 flag
0
Mm Hs VDR 0.011 0 0 0.003 0 8 Osteoclasts Mesoderm Bone NR1I1,PPP1R163 vitamin D receptor Yflag
0
Mm Hs CASR 0.001 0 0 0.002 0.001 4 Osteoclasts Mesoderm Bone FHH,NSHPT,GPRC2A,HHC,HHC1 calcium sensing receptor Yflag
0
Mm Hs CD68 0.063 0 1 0 0.076 3 Osteoclasts Mesoderm Bone SCARD1,macrosialin,DKFZp686M18236,LAMP4 CD68 molecule flag
0
Mm Hs GRM8 0.002 0 0 0.004 0.001 2 Osteoclasts Mesoderm Bone GLUR8,GPRC1H,mGlu8,MGLUR8 glutamate metabotropic receptor 8 flag
0
Mm Hs SMAD4 0.018 0 0 0.009 0 2 Osteoclasts Mesoderm Bone DPC4,MADH4 SMAD family member 4 Yflag
0
Mm Hs SPP1 0.057 0 0 0.053 0 4 Osteoclasts Mesoderm Bone BSPI,ETA-1,BNSP,OPN secreted phosphoprotein 1 flag
0
Mm Hs THRA 0.28 0 0 0.03 0 1 Osteoclasts Mesoderm Bone EAR-7.1/EAR-7.2,THRA3,AR7,ERBA,NR1A1,THRA2,ERBA1 thyroid hormone receptor alpha Yflag
0
Mm Hs ZBTB7A 0.091 0 0 0.021 0 1 Osteoclasts Mesoderm Bone FBI-1,DKFZp547O146,pokemon,ZNF857A,ZBTB7 zinc finger and BTB domain containing 7A flag
0
Mm Hs SEMA4D 0.036 0 0 0.007 0 2 Osteoclasts Mesoderm Bone CD100,coll-4,FLJ39737,SEMAJ,C9orf164 semaphorin 4D flag
0
Mm Hs TNFRSF11B 0.002 0 0 0.002 0 1 Osteoclasts Mesoderm Bone TNF receptor superfamily member 11b Yflag
0
Mm Hs PTPRA 0.158 0 0.5 0.049 0.185 1 Osteoclasts Mesoderm Bone HLPR,HPTPA,RPTPA,PTPRL2,PTPA protein tyrosine phosphatase, receptor type A flag
0
Mm Hs TNFRSF11A 0.001 0 0 0.001 0 2 Osteoclasts Mesoderm Bone RANK,CD265,FEO,PDB2,LOH18CR1 TNF receptor superfamily member 11a Yflag
0
Mm Hs MMP9 0.015 0 1 0.01 0.017 6 Osteoclasts Mesoderm Bone CLG4B matrix metallopeptidase 9 Yflag
0
Mm Hs ACP5 0.033 0 1 0.018 0.036 3 Osteoclasts Mesoderm Bone HPAP acid phosphatase 5, tartrate resistant Yflag
0
Mm Hs RAB3B 0.023 0 0 0.019 0 4 Osteoclasts Mesoderm Bone RAB3B, member RAS oncogene family flag
0
Mm Hs ITPR3 0.007 0 0 0.013 0.006 2 Osteoclasts Mesoderm Bone IP3R3 inositol 1,4,5-trisphosphate receptor type 3 Yflag
0
Mm Hs NRP2 0.04 0 1 0.035 0.041 5 Osteoclasts Mesoderm Bone VEGF165R2 neuropilin 2 flag
0
Mm Hs SOST 0.002 0 0 0.007 0 2 Osteoclasts Mesoderm Bone VBCH,DAND6 sclerostin Yflag
0
Mm Hs AGER 0.011 0 0 0.001 0.014 6 Osteoclasts Mesoderm Bone SCARJ1 advanced glycosylation end-product specific receptor flag
0
Mm Hs RGS18 0.019 0 0 0.003 0 4 Osteoclasts Mesoderm Bone RGS13 regulator of G protein signaling 18 flag
0
Mm Hs PTH1R 0.019 0 0 0.005 0.023 5 Osteoclasts Mesoderm Bone PTHR1 parathyroid hormone 1 receptor Yflag
0
Hs LTB4R 0 0 0 0.002 0 1 Osteoclasts Mesoderm Bone BLTR,P2Y7,LTB4R1,P2RY7,GPR16,CMKRL1 leukotriene B4 receptor flag
0
Mm Hs TRPV5 0 0 0 0 0 2 Osteoclasts Mesoderm Bone CaT2,ECAC1 transient receptor potential cation channel subfamily V member 5 flag
0
Mm Hs SNX10 0.051 0 0 0.033 0 1 Osteoclasts Mesoderm Bone sorting nexin 10 Yflag
0
Mm Hs CTSK 0.027 0 1 0.018 0.029 3 Osteoclasts Mesoderm Bone PKND,CTSO2,CTSO,PYCD cathepsin K Yflag
0
Mm Hs OSCAR 0 0 1 0.001 0 1 Osteoclasts Mesoderm Bone osteoclast associated, immunoglobulin-like receptor flag
0
Mm Hs SLC2A1 0.062 0 0 0.056 0 2 Osteoclasts Mesoderm Bone DYT18,DYT9,GLUT1,GLUT,HTLVR,CSE solute carrier family 2 member 1 Yflag
0
Mm Hs DCSTAMP 0.001 0 1 0.002 0 1 Osteoclasts Mesoderm Bone DC-STAMP,FIND,TM7SF4 dendrocyte expressed seven transmembrane protein flag
0
Mm Hs EGFL7 0.092 0 0.5 0.115 0.086 2 Osteoclasts Mesoderm Bone ZNEU1 EGF like domain multiple 7 flag
-1
Mm Hs KCNMA1 0.043 0 0 0.018 0.049 6 Osteoclasts Mesoderm Bone KCa1.1,mSLO1,SLO potassium calcium-activated channel subfamily M alpha 1 Yflag

Datasets with computationally identified Osteoclasts

SRA SRS tissue cluster cell type p-value FDR View
SRA815866 SRS4088858 Bone marrow 15 Osteoclasts 1.23E-7 2.29E-5 view data
SRA815866 SRS4088857 Bone marrow 10 Osteoclasts 2.41E-5 5.80E-3 view data