Cell type gene expression markers


This is a list of gene expression markers are used to define cell types. Green rows indicate canonical markers (classical markers used to define the cell type).

Summary: 8286 associations (178 cell types, 4679 gene symbols, 29 tissues); Last updated: 27/03/2020 10:44:00 CET

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Description: Myofibroblast-like cells that are located in exocrine regions of the pancreas. Pancreatic stellate cell activation and expression of matrix molecules constitute the complex process that induces pancreatic fibrosis.

Gene expression markers for Pancreatic stellate cells

Vote(s) Species Official gene symbol UI Sensitivity (human) Sensitivity (mouse) Specificity (human) Specificity (mouse) Marker count Cell type Germ layer Organ Aliases Product description Disease Action
4
Mm Hs COL6A1 0.063 0.826 1 0.085 0.055 3 Pancreatic stellate cells Endoderm Pancreas collagen type VI alpha 1 chain Yflag
2
Mm Hs RGS5 0.043 NA NA NA NA 6 Pancreatic stellate cells Endoderm Pancreas regulator of G protein signaling 5 Yflag
1
Mm Hs COL1A1 0.081 0.87 1 0.094 0.073 6 Pancreatic stellate cells Endoderm Pancreas collagen type I alpha 1 chain Yflag
0
Mm Hs MMP11 0.01 0.435 0 0.001 0.009 2 Pancreatic stellate cells Endoderm Pancreas STMY3 matrix metallopeptidase 11 flag
0
Mm Hs THY1 0.095 0.696 0 0.027 0 7 Pancreatic stellate cells Endoderm Pancreas CD90 Thy-1 cell surface antigen flag
0
Mm Hs COL6A3 0.032 0.652 1 0.04 0.028 2 Pancreatic stellate cells Endoderm Pancreas collagen type VI alpha 3 chain Yflag
0
Mm Hs SFRP2 0.009 0.522 0 0.02 0 2 Pancreatic stellate cells Endoderm Pancreas SARP1,SDF-5,FRP-2 secreted frizzled related protein 2 flag
0
Mm Hs COL1A2 0.097 0.957 1 0.118 0.088 3 Pancreatic stellate cells Endoderm Pancreas collagen type I alpha 2 chain Yflag
0
Mm Hs TNFAIP6 0.024 0.609 0 0.022 0 1 Pancreatic stellate cells Endoderm Pancreas TSG6,TSG-6 TNF alpha induced protein 6 flag
0
Mm Hs TIMP3 0.147 0.696 0 0.157 0 2 Pancreatic stellate cells Endoderm Pancreas TIMP metallopeptidase inhibitor 3 Yflag
0
Mm Hs SPARC 0.307 1 0 0.225 0 5 Pancreatic stellate cells Endoderm Pancreas ON secreted protein acidic and cysteine rich Yflag
0
Mm Hs COL3A1 0.086 0.87 1 0.094 0.081 4 Pancreatic stellate cells Endoderm Pancreas EDS4A collagen type III alpha 1 chain Yflag
0
Mm Hs MGP 0.082 0.783 0.5 0.112 0.073 4 Pancreatic stellate cells Endoderm Pancreas matrix Gla protein Yflag
0
Mm Hs COL6A2 0.056 0.913 0.5 0.098 0.044 3 Pancreatic stellate cells Endoderm Pancreas collagen type VI alpha 2 chain Yflag
0
Mm Hs COL4A1 0.105 0.913 0.5 0.075 0.113 3 Pancreatic stellate cells Endoderm Pancreas collagen type IV alpha 1 chain Yflag
0
Mm Hs FN1 0.091 0.652 0.5 0.095 0.087 4 Pancreatic stellate cells Endoderm Pancreas CIG,LETS,GFND2,FINC fibronectin 1 Yflag
0
Mm Hs SPON2 0.017 0.87 0 0.043 0 7 Pancreatic stellate cells Endoderm Pancreas DIL1 spondin 2 flag
0
Mm Hs TIMP1 0.097 0.957 0 0.406 0 3 Pancreatic stellate cells Endoderm Pancreas TIMP,CLGI TIMP metallopeptidase inhibitor 1 flag
0
Mm Hs TGFB1 0.11 0.348 0 0.043 0 3 Pancreatic stellate cells Endoderm Pancreas CED,TGFbeta,TGFB,DPD1 transforming growth factor beta 1 Yflag
0
Mm Hs INHBA 0.013 0.13 0.5 0.007 0.013 3 Pancreatic stellate cells Endoderm Pancreas inhibin subunit beta A flag
0
Mm Hs PDGFRA 0.044 0 0.5 0.048 0.044 6 Pancreatic stellate cells Endoderm Pancreas CD140a,PDGFR2,GAS9 platelet derived growth factor receptor alpha Yflag
0
Mm Hs NDUFA4L2 0.031 0.913 0 0.017 0.032 3 Pancreatic stellate cells Endoderm Pancreas NUOMS,FLJ26118 NDUFA4, mitochondrial complex associated like 2 flag
0
Mm Hs MMP14 0.054 0.609 1 0.031 0.057 3 Pancreatic stellate cells Endoderm Pancreas MT1-MMP matrix metallopeptidase 14 Yflag
0
Mm Hs CTGF 0.028 0.217 0 0.099 0.012 11 Pancreatic stellate cells Endoderm Pancreas IGFBP8,CCN2 connective tissue growth factor flag
0
Mm Hs CYGB 0.038 0.391 0.5 0.019 0.043 3 Pancreatic stellate cells Endoderm Pancreas HGB,STAP cytoglobin Yflag
0
Mm Hs KRT10 0.099 0.783 0 0.385 0.029 2 Pancreatic stellate cells Endoderm Pancreas K10,CK10,KPP keratin 10 Yflag
0
Mm Hs PDGFRB 0.033 0.957 1 0.03 0.033 7 Pancreatic stellate cells Endoderm Pancreas JTK12,CD140b,PDGFR1,PDGFR platelet derived growth factor receptor beta Yflag
0
Mm Hs DYNLT1 0.083 0.87 0 0.348 0.016 2 Pancreatic stellate cells Endoderm Pancreas TCTEL1 dynein light chain Tctex-type 1 flag
0
Mm Hs GEM 0.038 0.957 0.5 0.03 0.039 3 Pancreatic stellate cells Endoderm Pancreas GTP binding protein overexpressed in skeletal muscle flag

Datasets with computationally identified Pancreatic stellate cells

SRA SRS tissue cluster cell type p-value FDR View
SRA701877 SRS3279684 Pancreatic islets 4 Pancreatic stellate cells 6.36E-8 1.74E-5 view data
SRA701877 SRS3279684 Pancreatic islets 12 Pancreatic stellate cells 1.62E-4 1.74E-2 view data
SRA701877 SRS3279694 Pancreatic islets 3 Pancreatic stellate cells 2.70E-7 8.15E-5 view data
SRA703206 SRS3296613 Colon (Ulcerative Colitis) 8 Pancreatic stellate cells 6.37E-8 1.28E-5 view data
SRA701877 SRS3279692 Pancreatic islets 5 Pancreatic stellate cells 9.56E-11 4.82E-8 view data
SRA701877 SRS3279692 Pancreatic islets 11 Pancreatic stellate cells 5.42E-4 4.10E-2 view data
SRA701877 SRS3279685 Pancreatic islets 5 Pancreatic stellate cells 5.14E-10 2.04E-7 view data
SRA703206 SRS3296614 Colon (Ulcerative Colitis) 10 Pancreatic stellate cells 2.23E-7 4.91E-5 view data
SRA701877 SRS3279686 Pancreatic islets 13 Pancreatic stellate cells 5.13E-7 1.41E-4 view data
SRA701877 SRS3279691 Pancreatic islets 3 Pancreatic stellate cells 4.23E-8 1.08E-5 view data
SRA681285 SRS3121030 Dermis 10 Pancreatic stellate cells 1.09E-4 1.23E-2 view data
SRA676027 SRS3102137 Embryonic stem cell line 11 Pancreatic stellate cells 7.62E-5 2.88E-2 view data
SRA782908 SRS3815606 Decidua 15 Pancreatic stellate cells 3.40E-7 3.93E-5 view data
SRA850958 SRS4386112 Substantia nigra 6 Pancreatic stellate cells 2.15E-4 2.86E-2 view data
SRA742961 SRS3565196 Prostate 14 Pancreatic stellate cells 1.06E-4 9.37E-3 view data
SRA701877 SRS3279688 Pancreatic islets 2 Pancreatic stellate cells 4.02E-7 1.42E-4 view data
SRA742961 SRS3565208 Prostate 7 Pancreatic stellate cells 6.09E-5 2.49E-2 view data
SRA701877 SRS3279687 Pancreatic islets 2 Pancreatic stellate cells 4.37E-10 2.50E-7 view data
SRA701877 SRS3279687 Pancreatic islets 10 Pancreatic stellate cells 3.42E-6 7.83E-4 view data
SRA701877 SRS3279689 Pancreatic islets 5 Pancreatic stellate cells 6.48E-9 1.65E-6 view data
SRA701877 SRS3279695 Pancreatic islets 8 Pancreatic stellate cells 5.30E-9 2.44E-6 view data
SRA780044 SRS3806572 Olfactory epithelium 20 Pancreatic stellate cells 2.20E-5 8.22E-3 view data
SRA701877 SRS3279690 Pancreatic islets 9 Pancreatic stellate cells 5.97E-8 2.11E-5 view data
SRA701877 SRS3279690 Pancreatic islets 14 Pancreatic stellate cells 7.75E-7 1.57E-4 view data
SRA701877 SRS3279693 Pancreatic islets 6 Pancreatic stellate cells 4.19E-7 9.33E-5 view data
SRA701877 SRS3279693 Pancreatic islets 12 Pancreatic stellate cells 9.38E-10 5.01E-7 view data