Cell type gene expression markers


This is a list of gene expression markers are used to define cell types. Green rows indicate canonical markers (classical markers used to define the cell type).

Summary: 8286 associations (178 cell types, 4679 gene symbols, 29 tissues); Last updated: 27/03/2020 10:44:00 CET

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Description: Satellite cells are precursors to skeletal muscle cells, able to give rise to satellite cells or differentiated skeletal muscle cells. They have the potential to provide additional myonuclei to their parent muscle fiber, or return to a quiescent state.

Gene expression markers for Satellite cells

Vote(s) Species Official gene symbol UI Sensitivity (human) Sensitivity (mouse) Specificity (human) Specificity (mouse) Marker count Cell type Germ layer Organ Aliases Product description Disease Action
7
Mm Hs PAX7 0.001 0 0.143 0.001 0.001 5 Satellite cells Mesoderm Skeletal muscle Hup1 paired box 7 Yflag
1
Mm Hs SOX8 0.028 0 0 0.001 0 3 Satellite cells Mesoderm Skeletal muscle SRY-box 8 flag
1
Mm Hs MYOD1 0.004 0 0.857 0.001 0.003 3 Satellite cells Mesoderm Skeletal muscle MYOD,bHLHc1,MYF3 myogenic differentiation 1 flag
1
Mm Hs MYF5 0.001 0 0.429 0 0.002 3 Satellite cells Mesoderm Skeletal muscle bHLHc2 myogenic factor 5 flag
1
Mm Hs NFATC2 0.001 0 0 0 0.001 2 Satellite cells Mesoderm Skeletal muscle NF-ATP,NFATp,NFAT1 nuclear factor of activated T cells 2 flag
0
Mm Hs SCRIB 0.005 0 0 0.002 0 1 Satellite cells Mesoderm Skeletal muscle KIAA0147,SCRB1,Vartul scribbled planar cell polarity protein Yflag
0
Mm Hs TNFRSF12A 0.084 0 0 0.151 0 2 Satellite cells Mesoderm Skeletal muscle FN14,TweakR,CD266 TNF receptor superfamily member 12A flag
0
Mm Hs RUNX1 0.054 0 0 0.031 0 4 Satellite cells Mesoderm Skeletal muscle PEBP2A2,AMLCR1,AML1,CBFA2 runt related transcription factor 1 Yflag
0
Mm Hs BARX2 0.006 0 0 0 0.007 1 Satellite cells Mesoderm Skeletal muscle BARX homeobox 2 flag
0
Mm Hs TRIM32 0.035 0 0 0 0 3 Satellite cells Mesoderm Skeletal muscle HT2A,TATIP,BBS11,LGMD2H tripartite motif containing 32 Yflag
0
Mm Hs VAMP2 0.186 0 0 0.368 0 1 Satellite cells Mesoderm Skeletal muscle VAMP-2,SYB2 vesicle associated membrane protein 2 flag
0
Mm Hs PEG3 0.113 0 0.143 0.026 0.133 1 Satellite cells Mesoderm Skeletal muscle ZKSCAN22,KIAA0287,ZNF904,ZSCAN24 paternally expressed 3 flag
0
Mm Hs MSTN 0.002 0 0 0 0.002 2 Satellite cells Mesoderm Skeletal muscle GDF8 myostatin Yflag
0
Mm ZFP423 0.041 NA NA NA NA 1 Satellite cells Mesoderm Skeletal muscle zinc finger protein 423 flag
0
Mm Hs SPRY1 0.019 0 0 0.03 0 2 Satellite cells Mesoderm Skeletal muscle hSPRY1 sprouty RTK signaling antagonist 1 flag
0
Mm Hs IRF2 0.03 0 0 0.013 0.034 2 Satellite cells Mesoderm Skeletal muscle interferon regulatory factor 2 flag
0
Mm Hs BMI1 0.009 0 0 0.005 0.009 6 Satellite cells Mesoderm Skeletal muscle RNF51,PCGF4 BMI1 proto-oncogene, polycomb ring finger flag
0
Mm Hs SIX1 0.014 0 0 0.027 0 3 Satellite cells Mesoderm Skeletal muscle DFNA23 SIX homeobox 1 Yflag
0
Mm Hs HOXC10 0.003 0 0.143 0.003 0.003 1 Satellite cells Mesoderm Skeletal muscle HOX3I homeobox C10 flag
0
Mm Hs NOTCH3 0.02 0 0.143 0.014 0.022 8 Satellite cells Mesoderm Skeletal muscle CASIL,CADASIL notch 3 Yflag
0
Mm Hs HEYL 0.013 0 0.143 0.004 0.015 2 Satellite cells Mesoderm Skeletal muscle bHLHb33,HEY3,HESR3 hes related family bHLH transcription factor with YRPW motif-like flag
0
Mm Hs GAL 0.014 0 1 0.018 0.011 6 Satellite cells Mesoderm Skeletal muscle GMAP,GAL-GMAP,GLNN,GALN galanin and GMAP prepropeptide Yflag
0
Mm Hs NCAM1 0.351 0 0.143 0.03 0.431 3 Satellite cells Mesoderm Skeletal muscle NCAM,CD56 neural cell adhesion molecule 1 flag
0
Mm Hs CAV1 0.077 0 0.143 0.121 0.068 2 Satellite cells Mesoderm Skeletal muscle caveolin 1 Yflag
0
Mm Hs ISL1 0.028 0 0 0.013 0.031 13 Satellite cells Mesoderm Skeletal muscle Isl-1,ISLET1 ISL LIM homeobox 1 flag
0
Mm Hs DMD 0.012 0 0 0.005 0.014 3 Satellite cells Mesoderm Skeletal muscle DXS142,DXS164,DXS206,DXS230,DXS239,DXS268,DXS269,DXS270,DXS272,MRX85 dystrophin Yflag
0
Mm Hs CDH1 0.056 0 0 0.042 0.057 15 Satellite cells Mesoderm Skeletal muscle uvomorulin,CD324,UVO cadherin 1 Yflag
0
Mm Hs ERBB2 0.004 0 0 0.007 0.004 1 Satellite cells Mesoderm Skeletal muscle HER-2,CD340,HER2,NGL erb-b2 receptor tyrosine kinase 2 Yflag
0
Mm Hs CDH15 0.003 0 0.143 0.002 0.003 3 Satellite cells Mesoderm Skeletal muscle CDH3 cadherin 15 Yflag
0
Mm Hs CXCR4 0.04 0 0 0.198 0.009 18 Satellite cells Mesoderm Skeletal muscle LESTR,NPY3R,HM89,NPYY3R,D2S201E,fusin,HSY3RR,CD184 C-X-C motif chemokine receptor 4 Yflag
0
Mm Hs FOXK1 0.004 0 0 0.015 0.001 1 Satellite cells Mesoderm Skeletal muscle IMAGE:5164497 forkhead box K1 flag
0
Mm Hs ITGA7 0.003 0 0 0.002 0.004 2 Satellite cells Mesoderm Skeletal muscle integrin subunit alpha 7 Yflag
0
Mm Hs TCF21 0.014 0 0 0.006 0 5 Satellite cells Mesoderm Skeletal muscle POD1,bHLHa23 transcription factor 21 flag
0
Mm Hs HMOX1 0.046 0 0.857 0.036 0.048 3 Satellite cells Mesoderm Skeletal muscle bK286B10,HO-1 heme oxygenase 1 Yflag
0
Mm Hs MESP1 0.005 0 0 0.007 0.005 2 Satellite cells Mesoderm Skeletal muscle MGC10676,bHLHc5 mesoderm posterior bHLH transcription factor 1 flag
0
Mm Hs MET 0.006 0 0 0.016 0.005 3 Satellite cells Mesoderm Skeletal muscle HGFR,RCCP2,DFNB97 MET proto-oncogene, receptor tyrosine kinase Yflag
0
Mm Hs CALCR 0 0 0 0 0 2 Satellite cells Mesoderm Skeletal muscle CTR calcitonin receptor Yflag
0
Mm Hs ASB5 0.002 0 1 0.002 0.002 1 Satellite cells Mesoderm Skeletal muscle ankyrin repeat and SOCS box containing 5 flag
0
Mm Hs SRXN1 0.022 0 0 0 0 1 Satellite cells Mesoderm Skeletal muscle Npn3,SRX1,YKL086W,dJ850E9.2,C20orf139 sulfiredoxin 1 flag
0
Mm Hs BDKRB1 0 0 0 0.002 0 1 Satellite cells Mesoderm Skeletal muscle BKR1,B1BKR,bradyb1 bradykinin receptor B1 flag
0
Mm Hs CDCP1 0.01 0 0 0.025 0.008 2 Satellite cells Mesoderm Skeletal muscle CD318,SIMA135 CUB domain containing protein 1 flag
0
Mm Hs VCAM1 0.041 0 0 0.007 0 6 Satellite cells Mesoderm Skeletal muscle CD106 vascular cell adhesion molecule 1 flag
0
Mm Hs CXCL1 0.032 0 1 0.046 0.03 8 Satellite cells Mesoderm Skeletal muscle SCYB1,GROa,MGSA-a,NAP-3,MGSA,GRO1,FSP C-X-C motif chemokine ligand 1 flag
-1
Mm Hs PAX3 0.004 0 0 0.004 0.004 4 Satellite cells Mesoderm Skeletal muscle HUP2,WS1 paired box 3 Yflag

Datasets with computationally identified Satellite cells

SRA SRS tissue cluster cell type p-value FDR View
SRA851241 SRS4388161 Muscle satellite cells 0 Satellite cells 1.10E-4 1.19E-2 view data
SRA851241 SRS4388161 Muscle satellite cells 1 Satellite cells 4.63E-5 5.72E-3 view data
SRA851241 SRS4388161 Muscle satellite cells 2 Satellite cells 4.36E-8 3.77E-5 view data
SRA851241 SRS4388161 Muscle satellite cells 3 Satellite cells 6.28E-6 1.81E-3 view data
SRA851241 SRS4388160 Muscle 0 Satellite cells 6.74E-5 2.87E-2 view data
SRA851241 SRS4388160 Muscle 3 Satellite cells 6.86E-6 5.90E-3 view data
SRA868105 SRS4566017 Hind limb muscles 0 Satellite cells 5.20E-7 2.06E-4 view data