Cell type gene expression markers


This is a list of gene expression markers are used to define cell types. Green rows indicate canonical markers (classical markers used to define the cell type).

Summary: 8286 associations (178 cell types, 4679 gene symbols, 29 tissues); Last updated: 27/03/2020 10:44:00 CET

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Description: Forming the outer layer of a blastocyst, which provide nutrients to the embryo and develop into a large part of the placenta. They are formed during the first stage of pregnancy and are the first cells to differentiate from the fertilized egg.

Gene expression markers for Trophoblast cells

Vote(s) Species Official gene symbol UI Sensitivity (human) Sensitivity (mouse) Specificity (human) Specificity (mouse) Marker count Cell type Germ layer Organ Aliases Product description Disease Action
1
Hs SIGLEC6 0 0 0 0 0 2 Trophoblast cells Zygote Embryo OB-BP1,SIGLEC-6,CD327,CD33L,CD33L1 sialic acid binding Ig like lectin 6 flag
1
Hs HLA-G 0.001 0 0 0.006 0 1 Trophoblast cells Zygote Embryo major histocompatibility complex, class I, G Yflag
0
Mm Hs CDX2 0.015 0 0 0.008 0.017 3 Trophoblast cells Zygote Embryo CDX3 caudal type homeobox 2 flag
0
Mm Hs TTPA 0.001 0 0 0 0 1 Trophoblast cells Zygote Embryo AVED alpha tocopherol transfer protein Yflag
0
Hs ERVFRD-1 0 0 0 0.001 0 1 Trophoblast cells Zygote Embryo HERV-W/FRD,HERV-FRD,envFRD,ERVFRDE1,syncytin-2 endogenous retrovirus group FRD member 1, envelope flag
0
Mm Hs PARP1 0.113 0 0 0.22 0.08 1 Trophoblast cells Zygote Embryo PARP,PPOL,ADPRT poly(ADP-ribose) polymerase 1 flag
0
Mm Hs PERP 0.077 0 0 0.168 0.052 3 Trophoblast cells Zygote Embryo PIGPC1,dJ496H19.1,KCP1,THW,KRTCAP1 PERP, TP53 apoptosis effector flag
0
Mm Hs TFEB 0.003 0 0 0.002 0 1 Trophoblast cells Zygote Embryo TCFEB,bHLHe35 transcription factor EB flag
0
Mm Hs PHLDA2 0.033 0 0 0.14 0.007 2 Trophoblast cells Zygote Embryo IPL,BWR1C,HLDA2,TSSC3 pleckstrin homology like domain family A member 2 flag
0
Mm Hs SERPINE1 0.014 0 0 0.039 0 3 Trophoblast cells Zygote Embryo PAI,PLANH1,PAI1 serpin family E member 1 Yflag
0
Mm Hs MLANA 0.002 0 0 0 0.002 3 Trophoblast cells Zygote Embryo melan-A flag
0
Mm Hs INHBA 0.013 0 0 0.008 0.013 3 Trophoblast cells Zygote Embryo inhibin subunit beta A flag
0
Hs CGB3 0 0 0 0 0 1 Trophoblast cells Zygote Embryo CGB chorionic gonadotropin subunit beta 3 flag
0
Mm Hs ASCL2 0.005 0 0 0.008 0.005 4 Trophoblast cells Zygote Embryo HASH2,bHLHa45 achaete-scute family bHLH transcription factor 2 flag
0
Mm Hs GCM1 0 0 0 0.001 0 1 Trophoblast cells Zygote Embryo hGCMa,GCMA glial cells missing homolog 1 flag
0
Mm Hs DLX3 0.001 0 0 0 0.001 1 Trophoblast cells Zygote Embryo distal-less homeobox 3 Yflag
0
Mm Hs KRT7 0.056 0 0 0.101 0.047 9 Trophoblast cells Zygote Embryo CK7,K2C7 keratin 7 flag
0
Mm Hs TNFRSF9 0.003 0 0 0.003 0 3 Trophoblast cells Zygote Embryo CD137,4-1BB,ILA TNF receptor superfamily member 9 flag
0
Mm Hs CD4 0.009 0 0 0.019 0.008 9 Trophoblast cells Zygote Embryo CD4 molecule Yflag
0
Mm Hs IGF2 0.013 0 0 0.046 0.001 8 Trophoblast cells Zygote Embryo FLJ44734,IGF-II,C11orf43 insulin like growth factor 2 Yflag
0
Mm Hs ACKR2 0.001 0 0 0 0.001 1 Trophoblast cells Zygote Embryo CCR10,D6,CCR9,CMKBR9 atypical chemokine receptor 2 flag
0
Mm Hs PTHLH 0.002 0 0 0.003 0.002 2 Trophoblast cells Zygote Embryo PTHRP parathyroid hormone like hormone Yflag
0
Mm Hs SIRT1 0.003 0 0 0.011 0 2 Trophoblast cells Zygote Embryo SIR2L1 sirtuin 1 flag
0
Mm Hs ELF5 0.004 0 0 0.004 0.004 1 Trophoblast cells Zygote Embryo E74 like ETS transcription factor 5 flag
0
Mm Hs HAND1 0.005 0 0 0.014 0.002 2 Trophoblast cells Zygote Embryo eHand,Thing1,Hxt,bHLHa27 heart and neural crest derivatives expressed 1 flag
0
Mm Hs LIF 0.002 0 0 0.005 0.001 3 Trophoblast cells Zygote Embryo CDF,HILDA LIF, interleukin 6 family cytokine flag
0
Mm Hs CYP24A1 0 0 0 0.003 0 2 Trophoblast cells Zygote Embryo CP24,P450-CC24,CYP24 cytochrome P450 family 24 subfamily A member 1 Yflag
0
Mm Hs ADAM19 0.013 0 0 0.024 0.011 2 Trophoblast cells Zygote Embryo MLTNB ADAM metallopeptidase domain 19 flag
0
Hs S100P 0.009 0 0 0.051 0 1 Trophoblast cells Zygote Embryo S100 calcium binding protein P flag
0
Mm Hs HOPX 0.033 0 0 0.092 0.022 10 Trophoblast cells Zygote Embryo LAGY,OB1,NECC1,SMAP31 HOP homeobox flag
0
Mm Hs STAR 0.001 0 0 0 0 3 Trophoblast cells Zygote Embryo StAR,STARD1 steroidogenic acute regulatory protein Yflag

Datasets with computationally identified Trophoblast cells

No data identified with this cell type.