Cell type gene expression markers


This is a list of gene expression markers are used to define cell types. Green rows indicate canonical markers (classical markers used to define the cell type).

Summary: 8286 associations (178 cell types, 4679 gene symbols, 29 tissues); Last updated: 27/03/2020 10:44:00 CET

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Description: Tuft cells are chemosensory cells in the epithelial lining of the intestines and respiratory tract. May play a role in defense against parasitic infections.
Synonym(s): Brush cells

Gene expression markers for Tuft cells

Vote(s) Species Official gene symbol UI Sensitivity (human) Sensitivity (mouse) Specificity (human) Specificity (mouse) Marker count Cell type Germ layer Organ Aliases Product description Disease Action
23
Mm Hs AVIL 0.005 0 1 0 0.006 2 Tuft cells Endoderm GI tract p92,FLJ12386,ADVIL,DOC6 advillin flag
2
Mm Hs POU2F3 0.001 0 0.385 0 0.001 1 Tuft cells Endoderm GI tract OCT11,PLA-1,Skn-1a,Epoc-1 POU class 2 homeobox 3 flag
2
Mm SIGLECF 0.002 NA NA NA NA 5 Tuft cells Endoderm GI tract sialic acid binding Ig-like lectin F flag
2
Mm Hs DCLK1 0.159 0 0.923 0.008 0.196 1 Tuft cells Endoderm GI tract KIAA0369,DCLK,DCDC3A,DCAMKL1 doublecortin like kinase 1 flag
1
Mm Hs CDHR2 0.013 0 0.769 0.017 0.012 1 Tuft cells Endoderm GI tract PC-LKC,FLJ20124,FLJ20383,PCLKC,PCDH24 cadherin related family member 2 flag
1
Mm Hs ESPN 0.017 0 1 0.015 0.018 1 Tuft cells Endoderm GI tract DFNB36 espin Yflag
0
Mm Hs TSLP 0.003 0 0 0.003 0 1 Tuft cells Endoderm GI tract thymic stromal lymphopoietin flag
0
Mm Hs DRD3 0 0 0 0 0 1 Tuft cells Endoderm GI tract dopamine receptor D3 Yflag
0
Mm NRADD 0.011 0 0.077 0 0.013 1 Tuft cells Endoderm GI tract neurotrophin receptor associated death domain flag
0
Mm Hs GNG13 0.006 0 0.231 0 0.008 5 Tuft cells Endoderm GI tract h2-35,G(gamma)13 G protein subunit gamma 13 flag
0
Mm Hs NREP 0.216 0 0 0.089 0.249 1 Tuft cells Endoderm GI tract P311,D4S114,PRO1873,PTZ17,SEZ17,C5orf13 neuronal regeneration related protein flag
0
Mm Hs RGS2 0.128 0 0 0.106 0 2 Tuft cells Endoderm GI tract G0S8 regulator of G protein signaling 2 flag
0
Mm Hs RAC2 0.172 0 0 0.185 0 2 Tuft cells Endoderm GI tract EN-7 Rac family small GTPase 2 Yflag
0
Mm Hs PTGS1 0.029 0 1 0.004 0.035 3 Tuft cells Endoderm GI tract PGHS-1,PTGHS prostaglandin-endoperoxide synthase 1 flag
0
Mm Hs IRF7 0.033 0 0.538 0.029 0.032 4 Tuft cells Endoderm GI tract interferon regulatory factor 7 Yflag
0
Mm Hs FFAR3 0 0 0.615 0 0 3 Tuft cells Endoderm GI tract FFA3R,GPR41 free fatty acid receptor 3 flag
0
Mm Hs ALOX5 0.006 0 1 0.003 0.006 2 Tuft cells Endoderm GI tract 5-LOX arachidonate 5-lipoxygenase Yflag
0
Mm CD24A 0.322 0 1 0 0.399 1 Tuft cells Endoderm GI tract CD24a antigen flag
0
Mm IL4RA 0.013 0 0 0 0.017 5 Tuft cells Endoderm GI tract interleukin 4 receptor, alpha flag
0
Mm Hs IL13RA1 0.016 0 0.923 0.029 0.013 2 Tuft cells Endoderm GI tract IL-13Ra,NR4,CD213a1 interleukin 13 receptor subunit alpha 1 flag
0
Mm Hs IL17RB 0.001 0 0.538 0 0.001 4 Tuft cells Endoderm GI tract IL17RH1,EVI27,CRL4,IL17BR interleukin 17 receptor B flag
0
Mm Hs PTPRC 0.125 0 0.077 0.216 0.106 8 Tuft cells Endoderm GI tract T200,CD45 protein tyrosine phosphatase, receptor type C Yflag
0
Mm Hs KLF6 0.3 0 0.231 0.431 0.276 2 Tuft cells Endoderm GI tract CPBP,GBF,Zf9,ST12,COPEB Kruppel like factor 6 Yflag
0
Mm Hs KLF3 0.066 0 0.231 0.065 0.068 1 Tuft cells Endoderm GI tract BKLF Kruppel like factor 3 flag
0
Mm Hs ASIC5 0 0 0 0 0 1 Tuft cells Endoderm GI tract INAC,HINAC,ACCN5 acid sensing ion channel subunit family member 5 flag
0
Mm Hs SUCNR1 0 0 0 0.001 0 1 Tuft cells Endoderm GI tract GPR91 succinate receptor 1 flag
0
Mm Hs ATOH1 0.003 0 0 0.001 0.003 3 Tuft cells Endoderm GI tract HATH1,MATH-1,Math1,bHLHa14 atonal bHLH transcription factor 1 flag
0
Mm Hs GFI1B 0.005 0 0.154 0.019 0.002 2 Tuft cells Endoderm GI tract ZNF163B growth factor independent 1B transcriptional repressor Yflag
0
Mm Hs PLCB2 0.001 0 0.077 0 0.001 1 Tuft cells Endoderm GI tract FLJ38135 phospholipase C beta 2 flag
0
Mm Hs IL25 0 0 0 0 0 1 Tuft cells Endoderm GI tract IL-17E,IL17E interleukin 25 flag
0
Mm Hs GNAT3 0 0 0.231 0 0 3 Tuft cells Endoderm GI tract gustducin,GDCA G protein subunit alpha transducin 3 flag
0
Mm Hs CAMK2B 0.08 0 0.231 0.011 0.097 1 Tuft cells Endoderm GI tract CAM2,CAMK2,CAMKB calcium/calmodulin dependent protein kinase II beta flag
0
Mm TUBB5 0.606 NA NA NA NA 1 Tuft cells Endoderm GI tract tubulin, beta 5 class I flag
0
Mm Hs SOX9 0.086 0 0 0.032 0 8 Tuft cells Endoderm GI tract SRA1,CMD1,CMPD1 SRY-box 9 Yflag
0
Mm Hs TAS1R3 0 0 0 0 0 4 Tuft cells Endoderm GI tract T1R3 taste 1 receptor member 3 flag
0
Mm Hs TRPM5 0.002 0 0 0 0 2 Tuft cells Endoderm GI tract LTRPC5,MTR1 transient receptor potential cation channel subfamily M member 5 flag
0
Mm Hs LRMP 0.015 0 1 0.003 0.015 2 Tuft cells Endoderm GI tract JAW1 lymphoid restricted membrane protein flag
0
Mm Hs FABP1 0.03 0 0.692 0.041 0.027 2 Tuft cells Endoderm GI tract L-FABP fatty acid binding protein 1 flag

Datasets with computationally identified Tuft cells

SRA SRS tissue cluster cell type p-value FDR View
SRA508949 SRS1876790 Small intestine 9 Tuft cells 3.25E-11 6.12E-9 view data
SRA628138 SRS2659226 Intestinal organoid epithelial cells 8 Tuft cells 6.17E-9 1.42E-6 view data
SRA868228 SRS4567381 Lung 16 Tuft cells 1.02E-8 1.80E-6 view data
SRA508949 SRS1876785 Small intestine 5 Tuft cells 3.69E-9 5.25E-7 view data
SRA868228 SRS4567382 Lung 15 Tuft cells 1.38E-7 2.06E-5 view data
SRA508949 SRS1876786 Small intestine 5 Tuft cells 1.66E-9 2.78E-7 view data
SRA780044 SRS3806575 Olfactory epithelium 9 Tuft cells 4.76E-9 1.30E-6 view data
SRA508949 SRS1876788 Small intestine 6 Tuft cells 1.95E-7 2.33E-5 view data
SRA508949 SRS1876789 Small intestine 7 Tuft cells 2.88E-10 4.35E-8 view data
SRA628138 SRS2659249 Intestinal organoid epithelial cells 7 Tuft cells 7.35E-8 1.55E-5 view data
SRA628138 SRS2659220 Intestinal organoid epithelial cells 12 Tuft cells 4.50E-8 7.87E-6 view data
SRA653146 SRS2874272 Colon 14 Tuft cells 3.09E-14 8.18E-12 view data
SRA508949 SRS1876795 Small intestine 9 Tuft cells 9.80E-12 1.69E-9 view data