Cell type gene expression markers


This is a list of gene expression markers are used to define cell types. Green rows indicate canonical markers (classical markers used to define the cell type).

Summary: 8286 associations (178 cell types, 4679 gene symbols, 29 tissues); Last updated: 27/03/2020 10:44:00 CET

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Description: A type of macrophage found in the pulmonary alveolus, near the pneumocytes, but separated from the wall. Activity of the alveolar macrophage is relatively high, because they are located at one of the major boundaries between the body and the outside world. They are responsible for removing particles such as dust or microorganisms from the respiratory surfaces.
Synonym(s): Dust cells

Gene expression markers for Alveolar macrophages

Vote(s) Species Official gene symbol UI Sensitivity (human) Sensitivity (mouse) Specificity (human) Specificity (mouse) Marker count Cell type Germ layer Organ Aliases Product description Disease Action
3
Mm SIGLECF 0.002 NA NA NA NA 5 Alveolar macrophages Mesoderm Lungs sialic acid binding Ig-like lectin F flag
1
Mm Hs ITGAX 0.007 NA 0.435 0.016 0.003 8 Alveolar macrophages Mesoderm Lungs CD11c,CD11C integrin subunit alpha X flag
0
Mm Hs GAL 0.014 NA 0.087 0.018 0.011 6 Alveolar macrophages Mesoderm Lungs GMAP,GAL-GMAP,GLNN,GALN galanin and GMAP prepropeptide Yflag
0
Mm Hs CD36 0.042 NA 0.489 0.034 0.042 10 Alveolar macrophages Mesoderm Lungs SCARB3,GPIV,GP4,GP3B CD36 molecule Yflag
0
Mm CAR4 0.032 NA 0.478 NA 0.037 2 Alveolar macrophages Mesoderm Lungs carbonic anhydrase 4 flag
0
Mm EAR2 0.009 NA 0.902 NA 0.005 5 Alveolar macrophages Mesoderm Lungs eosinophil-associated, ribonuclease A family, member 2 flag
0
Mm Hs TLR2 0.014 NA NA 0.001 NA 8 Alveolar macrophages Mesoderm Lungs TIL4,CD282 toll like receptor 2 Yflag
0
Mm Hs GPNMB 0.013 NA 0.196 0.03 0.008 4 Alveolar macrophages Mesoderm Lungs NMB,HGFIN glycoprotein nmb flag
0
Mm Hs MRC1 0.029 NA 0.87 0.01 0.03 5 Alveolar macrophages Mesoderm Lungs CLEC13D,CD206,bA541I19.1,CLEC13DL,MRC1L1 mannose receptor C-type 1 flag
0
Mm LYZ1 0.031 NA 0.543 NA 0.035 4 Alveolar macrophages Mesoderm Lungs lysozyme 1 flag
0
Mm Hs CSF2RB 0.018 NA 0.522 0.003 0.018 2 Alveolar macrophages Mesoderm Lungs IL5RB,CD131,betaGMR,IL3RB colony stimulating factor 2 receptor beta common subunit Yflag
0
Mm Hs MPP1 0.043 NA 0.217 0.047 0.041 1 Alveolar macrophages Mesoderm Lungs PEMP,DXS552E membrane palmitoylated protein 1 flag
0
Mm Hs TRIM25 0.027 NA NA 0.018 NA 1 Alveolar macrophages Mesoderm Lungs EFP,RNF147,ZNF147 tripartite motif containing 25 flag
0
Mm EAR1 0.003 NA 0.609 NA 0 2 Alveolar macrophages Mesoderm Lungs eosinophil-associated, ribonuclease A family, member 1 flag
0
Mm Hs OLR1 0.004 NA 0.478 0.008 0 1 Alveolar macrophages Mesoderm Lungs LOX-1,SCARE1,CLEC8A oxidized low density lipoprotein receptor 1 Yflag
0
Mm Hs S100A4 0.098 NA NA 0.371 NA 9 Alveolar macrophages Mesoderm Lungs P9KA,18A2,PEL98,42A,CAPL S100 calcium binding protein A4 flag
0
Mm Hs GNGT2 0.054 NA 0.63 0 0.062 2 Alveolar macrophages Mesoderm Lungs GNG9 G protein subunit gamma transducin 2 flag
0
Mm CHIL3 0.022 NA 0.913 NA 0.021 2 Alveolar macrophages Mesoderm Lungs chitinase-like 3 flag
0
Mm Hs TNFAIP2 0.027 NA NA 0.04 NA 2 Alveolar macrophages Mesoderm Lungs B94,EXOC3L3 TNF alpha induced protein 2 flag
0
Mm BCL2A1B 0.043 NA 0.685 NA 0.048 1 Alveolar macrophages Mesoderm Lungs B cell leukemia/lymphoma 2 related protein A1b flag
0
Mm Hs CLEC7A 0.03 NA 0.935 0.047 0.02 4 Alveolar macrophages Mesoderm Lungs dectin-1,hDectin-1,CD369,SCARE2,CLECSF12 C-type lectin domain containing 7A Yflag
0
Mm Hs GDA 0.039 NA 0.674 0.002 0.044 2 Alveolar macrophages Mesoderm Lungs guanine deaminase flag
0
Mm BCL2A1D 0.028 NA 0.75 NA 0.029 1 Alveolar macrophages Mesoderm Lungs B cell leukemia/lymphoma 2 related protein A1d flag
0
Mm Hs KLHDC4 0.008 NA 0.522 0.011 0.004 1 Alveolar macrophages Mesoderm Lungs DKFZp434G0522 kelch domain containing 4 flag
0
Mm Hs MCEMP1 0.022 NA 0.826 0.002 0.021 2 Alveolar macrophages Mesoderm Lungs MGC132456,C19orf59 mast cell expressed membrane protein 1 flag
0
Mm Hs CXCL2 0.041 NA 0.62 0.057 0.035 5 Alveolar macrophages Mesoderm Lungs SCYB2,GROb,MIP-2a,MGSA-b,CINC-2a,GRO2 C-X-C motif chemokine ligand 2 flag
0
Mm Hs G0S2 0.04 NA 0.141 0.045 0.037 4 Alveolar macrophages Mesoderm Lungs G0/G1 switch 2 flag
0
Mm Hs CCL3 0.036 NA 0.217 0.008 0.042 9 Alveolar macrophages Mesoderm Lungs G0S19-1,LD78ALPHA,MIP-1-alpha,SCYA3 C-C motif chemokine ligand 3 Yflag
0
Mm BGLAP3 0.002 NA 0.065 NA 0.002 1 Alveolar macrophages Mesoderm Lungs bone gamma-carboxyglutamate protein 3 flag
0
Mm WFDC21 0.02 NA NA NA NA 1 Alveolar macrophages Mesoderm Lungs WAP four-disulfide core domain 21 flag
0
Mm Hs IL1B 0.027 NA 0.37 0.025 0.026 6 Alveolar macrophages Mesoderm Lungs IL1F2,IL-1B,IL1-BETA interleukin 1 beta Yflag
0
Mm Hs PLET1 0.018 NA 0.793 NA 0.018 1 Alveolar macrophages Mesoderm Lungs C11orf34 placenta expressed transcript 1 flag
-1
Mm Hs MARCO 0.003 NA 0.239 0.004 0.002 2 Alveolar macrophages Mesoderm Lungs SCARA2,SR-A6 macrophage receptor with collagenous structure flag

Datasets with computationally identified Alveolar macrophages

SRA SRS tissue cluster cell type p-value FDR View
SRA665588 SRS3034034 Lung 0 Alveolar macrophages 1.99E-10 1.04E-7 view data
SRA665588 SRS3034034 Lung 1 Alveolar macrophages 2.00E-4 2.09E-2 view data
SRA665588 SRS3034034 Lung 3 Alveolar macrophages 5.39E-14 1.13E-10 view data
SRA665588 SRS3034034 Lung 6 Alveolar macrophages 9.08E-13 9.48E-10 view data
SRA665588 SRS3034034 Lung 7 Alveolar macrophages 1.11E-10 7.72E-8 view data
SRA665588 SRS3034034 Lung 10 Alveolar macrophages 6.57E-6 1.08E-3 view data
SRA611634 SRS2532205 Lung 1 Alveolar macrophages 5.46E-20 1.45E-16 view data
SRA611634 SRS2532205 Lung 5 Alveolar macrophages 9.76E-15 5.18E-12 view data
SRA832392 SRS4237528 Lung 2 Alveolar macrophages 6.22E-8 1.24E-5 view data
SRA653146 SRS3044253 Lung 4 Alveolar macrophages 4.51E-26 4.17E-23 view data
SRA653146 SRS3044253 Lung 18 Alveolar macrophages 9.86E-22 5.20E-19 view data
SRA653146 SRS2874276 Lung 23 Alveolar macrophages 8.27E-21 2.45E-18 view data
SRA611634 SRS2532207 Lung 10 Alveolar macrophages 9.26E-18 6.43E-15 view data
SRA665588 SRS3034027 Lung 2 Alveolar macrophages 7.97E-7 1.82E-4 view data
SRA862468 SRS4512239 Lung 5 Alveolar macrophages 2.53E-24 9.34E-21 view data
SRA862468 SRS4512239 Lung 12 Alveolar macrophages 1.85E-4 1.96E-2 view data
SRA832392 SRS4237518 Lung 1 Alveolar macrophages 2.48E-4 2.70E-2 view data
SRA739096 SRS3545827 Lung 0 Alveolar macrophages 2.80E-37 7.26E-34 view data
SRA739096 SRS3545827 Lung 1 Alveolar macrophages 2.20E-34 2.85E-31 view data
SRA739096 SRS3545827 Lung 2 Alveolar macrophages 8.85E-24 2.55E-21 view data
SRA739096 SRS3545827 Lung 3 Alveolar macrophages 2.95E-33 1.91E-30 view data
SRA739096 SRS3545827 Lung 4 Alveolar macrophages 2.63E-30 1.14E-27 view data
SRA739096 SRS3545827 Lung 5 Alveolar macrophages 1.78E-29 6.59E-27 view data
SRA739096 SRS3545827 Lung 7 Alveolar macrophages 8.55E-34 7.40E-31 view data
SRA739096 SRS3545827 Lung 8 Alveolar macrophages 8.41E-32 4.36E-29 view data
SRA739096 SRS3545827 Lung 9 Alveolar macrophages 2.56E-16 4.74E-14 view data
SRA739096 SRS3545827 Lung 10 Alveolar macrophages 4.60E-28 1.49E-25 view data
SRA739096 SRS3545827 Lung 11 Alveolar macrophages 1.42E-23 3.68E-21 view data
SRA739096 SRS3545827 Lung 13 Alveolar macrophages 7.82E-9 8.82E-7 view data
SRA653146 SRS3044252 Lung 0 Alveolar macrophages 7.24E-25 7.22E-22 view data
SRA868228 SRS4567381 Lung 4 Alveolar macrophages 2.08E-25 2.21E-22 view data
SRA638923 SRS2797073 Lung 5 Alveolar macrophages 5.52E-11 1.92E-8 view data
SRA862468 SRS4512240 Lung 5 Alveolar macrophages 8.17E-25 2.59E-21 view data
SRA862468 SRS4512240 Lung 13 Alveolar macrophages 4.25E-4 3.62E-2 view data
SRA653146 SRS3044261 Lung 6 Alveolar macrophages 4.86E-23 3.19E-20 view data
SRA739096 SRS3545826 Lung 0 Alveolar macrophages 7.63E-24 2.83E-21 view data
SRA739096 SRS3545826 Lung 1 Alveolar macrophages 5.88E-22 1.53E-19 view data
SRA739096 SRS3545826 Lung 2 Alveolar macrophages 4.52E-18 9.77E-16 view data
SRA739096 SRS3545826 Lung 3 Alveolar macrophages 1.21E-25 6.27E-23 view data
SRA739096 SRS3545826 Lung 4 Alveolar macrophages 1.87E-23 5.40E-21 view data
SRA739096 SRS3545826 Lung 5 Alveolar macrophages 1.96E-24 8.48E-22 view data
SRA739096 SRS3545826 Lung 6 Alveolar macrophages 2.70E-28 7.01E-25 view data
SRA739096 SRS3545826 Lung 7 Alveolar macrophages 7.93E-22 1.87E-19 view data
SRA739096 SRS3545826 Lung 8 Alveolar macrophages 1.04E-25 6.27E-23 view data
SRA739096 SRS3545826 Lung 9 Alveolar macrophages 4.22E-26 3.65E-23 view data
SRA739096 SRS3545826 Lung 10 Alveolar macrophages 9.63E-24 3.12E-21 view data
SRA739096 SRS3545826 Lung 11 Alveolar macrophages 2.24E-13 4.15E-11 view data
SRA739096 SRS3545826 Lung 12 Alveolar macrophages 1.20E-17 2.39E-15 view data
SRA739096 SRS3545826 Lung 13 Alveolar macrophages 9.28E-28 1.20E-24 view data
SRA822763 SRS4137616 Aorta 8 Alveolar macrophages 1.85E-6 8.81E-4 view data
SRA555753 SRS2135627 Neonatal mouse stomach explants 6 Alveolar macrophages 8.71E-14 2.07E-11 view data
SRA832392 SRS4237531 Lung 2 Alveolar macrophages 2.75E-4 1.71E-2 view data
SRA665588 SRS3034030 Lung 0 Alveolar macrophages 2.72E-7 1.14E-4 view data
SRA665588 SRS3034030 Lung 3 Alveolar macrophages 5.52E-15 1.16E-11 view data
SRA862468 SRS4512241 Lung 4 Alveolar macrophages 1.60E-30 2.53E-27 view data
SRA862468 SRS4512237 Lung 13 Alveolar macrophages 4.00E-28 6.33E-25 view data
SRA728071 SRS3458842 Leukocytes from aortas 14 Alveolar macrophages 1.88E-5 1.44E-3 view data
SRA868228 SRS4567382 Lung 2 Alveolar macrophages 4.08E-23 5.78E-20 view data
SRA832392 SRS4237526 Lung 1 Alveolar macrophages 1.28E-10 6.73E-8 view data
SRA815945 SRS4088994 Nerve 25 Alveolar macrophages 6.63E-4 4.85E-2 view data
SRA611634 SRS2532206 Lung 1 Alveolar macrophages 8.26E-20 5.52E-17 view data
SRA832392 SRS4237525 Lung 8 Alveolar macrophages 1.27E-8 3.69E-6 view data
SRA862468 SRS4512238 Lung 9 Alveolar macrophages 1.77E-27 3.60E-24 view data
SRA665588 SRS3034028 Lung 1 Alveolar macrophages 1.38E-5 3.32E-3 view data
SRA665588 SRS3034028 Lung 5 Alveolar macrophages 6.01E-11 7.24E-8 view data
SRA832392 SRS4237527 Lung 1 Alveolar macrophages 4.00E-7 5.41E-5 view data
SRA862468 SRS4512243 Lung 8 Alveolar macrophages 4.51E-27 1.60E-23 view data
SRA653146 SRS3044260 Lung 10 Alveolar macrophages 6.20E-21 2.98E-18 view data
SRA665588 SRS3034036 Lung 0 Alveolar macrophages 1.92E-18 2.85E-15 view data
SRA665588 SRS3034036 Lung 2 Alveolar macrophages 1.28E-8 4.36E-6 view data
SRA665588 SRS3034036 Lung 3 Alveolar macrophages 1.33E-16 1.32E-13 view data
SRA665588 SRS3034036 Lung 8 Alveolar macrophages 9.13E-10 6.79E-7 view data
SRA665588 SRS3034036 Lung 11 Alveolar macrophages 1.25E-8 4.36E-6 view data
SRA665588 SRS3034031 Lung 0 Alveolar macrophages 7.35E-15 8.80E-12 view data
SRA665588 SRS3034031 Lung 1 Alveolar macrophages 3.16E-9 1.89E-6 view data
SRA665588 SRS3034035 Lung 0 Alveolar macrophages 2.31E-12 2.23E-9 view data
SRA665588 SRS3034035 Lung 2 Alveolar macrophages 2.06E-15 3.96E-12 view data
SRA611634 SRS2532208 Lung 2 Alveolar macrophages 1.19E-14 1.16E-11 view data
SRA665588 SRS3034033 Lung 0 Alveolar macrophages 5.06E-7 1.73E-4 view data
SRA665588 SRS3034033 Lung 1 Alveolar macrophages 1.96E-11 2.01E-8 view data
SRA832392 SRS4237521 Lung 1 Alveolar macrophages 7.19E-9 1.66E-6 view data
SRA638923 SRS2797072 Lung 3 Alveolar macrophages 6.10E-10 2.46E-7 view data
SRA807566 SRS4031561 Lung 23 Alveolar macrophages 7.47E-5 1.19E-2 view data
SRA665588 SRS3034032 Lung 0 Alveolar macrophages 1.24E-15 1.28E-12 view data
SRA665588 SRS3034032 Lung 1 Alveolar macrophages 9.64E-15 4.97E-12 view data
SRA638923 SRS2797079 Lung 4 Alveolar macrophages 1.70E-14 8.77E-12 view data
SRA765288 SRS3731506 CD45+ cells 2 Alveolar macrophages 1.08E-4 1.35E-2 view data
SRA832392 SRS4237529 Lung 7 Alveolar macrophages 3.98E-10 1.11E-7 view data
SRA862468 SRS4512242 Lung 5 Alveolar macrophages 5.90E-31 1.98E-27 view data
SRA862468 SRS4512242 Lung 11 Alveolar macrophages 6.83E-8 9.58E-6 view data
SRA611634 SRS2532210 Lung 8 Alveolar macrophages 2.12E-18 2.58E-15 view data
SRA611634 SRS2532209 Lung 2 Alveolar macrophages 1.46E-17 1.93E-14 view data
SRA832392 SRS4237530 Lung 0 Alveolar macrophages 5.80E-10 1.61E-7 view data