Cell type gene expression markers


This is a list of gene expression markers are used to define cell types. Green rows indicate canonical markers (classical markers used to define the cell type).

Summary: 8286 associations (178 cell types, 4679 gene symbols, 29 tissues); Last updated: 27/03/2020 10:44:00 CET

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Description: A type of immune cell that has granules (small particles) with enzymes that are released during allergic reactions. Basophils are the least common of the granulocytes, representing about 0.5 to 1% of circulating white blood cells.

Gene expression markers for Basophils

Vote(s) Species Official gene symbol UI Sensitivity (human) Sensitivity (mouse) Specificity (human) Specificity (mouse) Marker count Cell type Germ layer Organ Aliases Product description Disease Action
0
Mm Hs HIST1H1D 0.006 NA 0.067 0.02 0.003 1 Basophils Mesoderm Immune system H1.3,H1d,H1s-2,H1F3 histone cluster 1 H1 family member d flag
0
Mm NT5C3 0.068 NA 0.667 NA 0.084 1 Basophils Mesoderm Immune system 5'-nucleotidase, cytosolic III flag
0
Mm Hs NPL 0.017 NA 0.2 0.019 0.018 1 Basophils Mesoderm Immune system NPL1,DHDPS1,C1orf13 N-acetylneuraminate pyruvate lyase flag
0
Mm Hs NFIL3 0.014 NA 0.2 0.003 0.016 1 Basophils Mesoderm Immune system E4BP4,NFIL3A,NF-IL3A,IL3BP1 nuclear factor, interleukin 3 regulated flag
0
Mm Hs MBOAT1 0.006 NA 0.333 NA 0.007 1 Basophils Mesoderm Immune system MGC44669,dJ434O11.1,LPEAT1,OACT1 membrane bound O-acyltransferase domain containing 1 flag
0
Mm Hs LAMA5 0.008 NA NA 0.012 0.008 2 Basophils Mesoderm Immune system laminin subunit alpha 5 flag
0
Mm Hs L1CAM 0.018 NA NA 0.002 0.021 5 Basophils Mesoderm Immune system CD171,HSAS1,SPG1,HSAS,MIC5 L1 cell adhesion molecule Yflag
0
Mm Hs JAZF1 0.002 NA NA 0.008 0.001 1 Basophils Mesoderm Immune system TIP27,DKFZp761K2222,ZNF802 JAZF zinc finger 1 flag
0
Mm Hs INF2 0.015 NA 0.067 0.018 0.015 1 Basophils Mesoderm Immune system MGC13251,C14orf151,C14orf173 inverted formin, FH2 and WH2 domain containing Yflag
0
Mm Hs IFITM1 0.059 NA 1 0.032 0.064 3 Basophils Mesoderm Immune system 9-27,CD225,DSPA2a,IFI17 interferon induced transmembrane protein 1 flag
0
Mm Hs HIST1H2AC 0.01 NA 0.067 0.032 0.004 1 Basophils Mesoderm Immune system H2AFL histone cluster 1 H2A family member c flag
0
Mm Hs OSBPL5 0.003 NA NA NA 0.004 1 Basophils Mesoderm Immune system KIAA1534,ORP5,OBPH1 oxysterol binding protein like 5 flag
0
Mm Hs HGF 0.002 NA 0.533 0.008 0 3 Basophils Mesoderm Immune system F-TCF,HGFB,HPTA,DFNB39 hepatocyte growth factor Yflag
0
GPR97 0 NA NA NA NA 1 Basophils Mesoderm Immune system flag
0
Mm Hs GPR183 0.019 NA 0.267 0.049 0.012 3 Basophils Mesoderm Immune system EBI2 G protein-coupled receptor 183 flag
0
4 GM9895 0 NA NA NA NA 1 Basophils Mesoderm Immune system predicted gene 9895 flag
0
Mm Hs GABBR1 0.14 NA NA 0.002 0.176 1 Basophils Mesoderm Immune system hGB1a,GPRC3A gamma-aminobutyric acid type B receptor subunit 1 flag
0
Mm Hs FBXO9 0.059 NA 0.4 0.039 0.063 1 Basophils Mesoderm Immune system FBX9,NY-REN-57 F-box protein 9 flag
0
Mm Hs FAR2 0.004 NA 0.067 0.01 0.003 1 Basophils Mesoderm Immune system FLJ10462,SDR10E2,MLSTD1 fatty acyl-CoA reductase 2 flag
0
Mm Hs FADS1 0.05 NA NA 0.077 0.038 1 Basophils Mesoderm Immune system D5D,FADSD5,TU12,FADS6,LLCDL1 fatty acid desaturase 1 flag
0
Mm Hs E2F8 0.002 NA NA NA 0.003 1 Basophils Mesoderm Immune system FLJ23311 E2F transcription factor 8 flag
0
Mm Hs SLC26A3 0.003 NA NA 0.012 NA 2 Basophils Mesoderm Immune system DRA,CLD solute carrier family 26 member 3 Yflag
0
Mm Hs ID1 0.149 NA 0.267 0.21 0.128 2 Basophils Mesoderm Immune system dJ857M17.1.2,bHLHb24 inhibitor of DNA binding 1, HLH protein flag
0
Mm Hs WRN 0.004 NA NA 0.006 NA 2 Basophils Mesoderm Immune system RECQL2,RECQ3 Werner syndrome RecQ like helicase Yflag
0
Mm Hs UNC93A 0 NA NA NA NA 1 Basophils Mesoderm Immune system dJ366N23.2,dJ366N23.1 unc-93 homolog A flag
0
Mm Hs TEC 0.001 NA NA NA NA 1 Basophils Mesoderm Immune system PSCTK4 tec protein tyrosine kinase flag
0
Mm Hs TULP3 0.007 NA NA 0.012 NA 1 Basophils Mesoderm Immune system TUBL3 tubby like protein 3 flag
0
Hs SUPT3H 0.004 NA NA 0.019 NA 1 Basophils Mesoderm Immune system SPT3,SPT3L SPT3 homolog, SAGA and STAGA complex component flag
0
Mm Hs ST6GALNAC5 0.007 NA NA 0.002 NA 1 Basophils Mesoderm Immune system MGC3184,ST6GalNAcV,SIAT7E ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 flag
0
Mm Hs SNCAIP 0.002 NA NA 0.006 NA 1 Basophils Mesoderm Immune system SYPH1 synuclein alpha interacting protein Yflag
0
Mm Hs SLC26A8 0.003 NA NA 0.012 NA 1 Basophils Mesoderm Immune system solute carrier family 26 member 8 Yflag
0
Mm DEFB40 0 NA NA NA NA 1 Basophils Mesoderm Immune system defensin beta 40 flag
0
Mm Hs RNF39 0.001 NA NA 0.002 NA 1 Basophils Mesoderm Immune system HZFw1,LIRF ring finger protein 39 flag
0
Mm Hs PLG 0.001 NA NA 0 0.002 1 Basophils Mesoderm Immune system plasminogen Yflag
0
Mm Hs PLEKHG5 0.003 NA 0.067 0.001 0.004 1 Basophils Mesoderm Immune system KIAA0720,Syx,GEF720,Tech pleckstrin homology and RhoGEF domain containing G5 Yflag
0
Hs PIGY 0 NA NA NA NA 1 Basophils Mesoderm Immune system MGC14156 phosphatidylinositol glycan anchor biosynthesis class Y Yflag
0
Mm Hs PERP 0.077 NA 0.133 0.168 0.052 3 Basophils Mesoderm Immune system PIGPC1,dJ496H19.1,KCP1,THW,KRTCAP1 PERP, TP53 apoptosis effector flag
0
Mm Hs PDZD4 0.005 NA NA NA 0.006 1 Basophils Mesoderm Immune system KIAA1444,LU1,FLJ34125,PDZRN4L,LNX5,PDZK4 PDZ domain containing 4 flag
0
Mm Hs PDK3 0.015 NA NA 0.006 0.017 1 Basophils Mesoderm Immune system pyruvate dehydrogenase kinase 3 Yflag
0
Mm Hs P2RY1 0.003 NA 0.133 0.002 0.003 3 Basophils Mesoderm Immune system P2Y1,SARCC purinergic receptor P2Y1 flag
0
Mm Hs OTUB2 0.006 NA NA 0.014 0.005 2 Basophils Mesoderm Immune system FLJ21916,MGC3102,C14orf137 OTU deubiquitinase, ubiquitin aldehyde binding 2 flag
0
Mm Hs ITGAX 0.007 NA NA 0.016 0.005 8 Basophils Mesoderm Immune system CD11c,CD11C integrin subunit alpha X flag
0
Mm Hs CCL3 0.036 NA 1 0.008 0.042 9 Basophils Mesoderm Immune system G0S19-1,LD78ALPHA,MIP-1-alpha,SCYA3 C-C motif chemokine ligand 3 Yflag
0
Mm Hs GATA2 0.02 NA 0.933 0.013 0.021 6 Basophils Mesoderm Immune system NFE1B GATA binding protein 2 Yflag
0
Mm Hs HDC 0.019 NA 1 0.002 0.022 5 Basophils Mesoderm Immune system histidine decarboxylase Yflag
0
Mm Hs MS4A3 0.013 NA 0.2 0.003 0.014 1 Basophils Mesoderm Immune system HTM4,CD20L membrane spanning 4-domains A3 flag
0
Mm Hs MS4A2 0.003 NA 0.933 0.002 0.002 2 Basophils Mesoderm Immune system MS4A1,FCER1B,APY membrane spanning 4-domains A2 Yflag
0
Mm PRSS34 0.003 NA 0.667 NA 0.003 1 Basophils Mesoderm Immune system protease, serine 34 flag
0
Mm MCPT8 0.004 NA 1 NA 0.004 1 Basophils Mesoderm Immune system mast cell protease 8 flag
0
Mm Hs IL4 0.002 NA 0.6 NA 0.002 4 Basophils Mesoderm Immune system BSF1,IL-4,BCGF1,BCGF-1,MGC79402 interleukin 4 flag
0
Mm Hs ITGB7 0.031 NA 0.8 NA 0.037 2 Basophils Mesoderm Immune system integrin subunit beta 7 flag
0
Hs IL4R 0.002 NA NA 0.01 NA 4 Basophils Mesoderm Immune system CD124 interleukin 4 receptor Yflag
0
Mm Hs CD33 0.017 NA NA 0.013 0.017 7 Basophils Mesoderm Immune system SIGLEC3,SIGLEC-3,FLJ00391 CD33 molecule flag
0
Mm Hs ITGAM 0.025 NA 0.067 0.003 0.03 8 Basophils Mesoderm Immune system CD11b,CR3A,CD11B integrin subunit alpha M Yflag
0
Mm Hs ITGAL 0.013 NA 0.067 0.004 0.015 5 Basophils Mesoderm Immune system CD11A integrin subunit alpha L flag
0
Mm Hs CPA3 0.009 NA 0.933 0.008 0.008 3 Basophils Mesoderm Immune system carboxypeptidase A3 flag
0
Mm Hs LTC4S 0.037 NA NA 0.008 0.045 5 Basophils Mesoderm Immune system MGC33147 leukotriene C4 synthase Yflag
0
Mm Hs TLR4 0 NA NA 0 NA 10 Basophils Mesoderm Immune system hToll,CD284,TLR-4,ARMD10 toll like receptor 4 Yflag
0
Mm Hs FCER1A 0.004 NA 0.867 0.018 0.001 3 Basophils Mesoderm Immune system FCE1A Fc fragment of IgE receptor Ia flag
0
Mm Hs ENPP3 0.002 NA NA NA 0.002 2 Basophils Mesoderm Immune system PD-IBETA,gp130RB13-6,B10,CD203c,PDNP3 ectonucleotide pyrophosphatase/phosphodiesterase 3 flag
0
Mm Hs CCR3 0.001 NA NA NA 0.001 6 Basophils Mesoderm Immune system CC-CKR-3,CKR3,CD193,CMKBR3 C-C motif chemokine receptor 3 flag
0
Mm Hs IL3RA 0.008 NA 0.6 NA 0.007 3 Basophils Mesoderm Immune system CD123 interleukin 3 receptor subunit alpha flag
0
Mm Hs ACSS2 0.006 NA 0.067 0.006 0.007 2 Basophils Mesoderm Immune system ACSA,AceCS,dJ1161H23.1,ACAS2 acyl-CoA synthetase short chain family member 2 flag
0
Mm Hs CEBPA 0.025 NA 0.533 NA 0.029 7 Basophils Mesoderm Immune system C/EBP-alpha,CEBP CCAAT enhancer binding protein alpha Yflag
0
Mm CCL9 0.037 NA 0.933 NA 0.043 6 Basophils Mesoderm Immune system chemokine (C-C motif) ligand 9 flag
0
Mm Hs CCL4 0.049 NA 0.933 0.056 0.048 4 Basophils Mesoderm Immune system MIP-1-beta,Act-2,AT744.1,SCYA4 C-C motif chemokine ligand 4 flag
0
Mm Hs CABLES1 0.001 NA NA 0 0.001 1 Basophils Mesoderm Immune system HsT2563,FLJ35924 Cdk5 and Abl enzyme substrate 1 flag
0
Mm Hs BMP4 0.019 NA NA 0.024 0.017 6 Basophils Mesoderm Immune system BMP2B bone morphogenetic protein 4 Yflag
0
Mm Hs BACE1 0.022 NA 0.067 0.004 0.026 3 Basophils Mesoderm Immune system BACE beta-secretase 1 flag
0
Mm Hs AQP9 0.003 NA 0.533 0.003 0.003 3 Basophils Mesoderm Immune system SSC1,HsT17287 aquaporin 9 flag
0
Mm ALOX8 0 NA 0.067 NA NA 1 Basophils Mesoderm Immune system arachidonate 8-lipoxygenase flag
0
Mm Hs ADORA2B 0.004 NA 0.133 0.004 0.004 1 Basophils Mesoderm Immune system adenosine A2b receptor flag
0
Mm Hs CD69 0.024 NA 0.467 0.111 0.007 11 Basophils Mesoderm Immune system CLEC2C CD69 molecule flag
0
Mm Hs GRM6 0.003 NA 0.067 NA 0.003 2 Basophils Mesoderm Immune system GPRC1F,mGlu6,MGLUR6,CSNB1B glutamate metabotropic receptor 6 Yflag
0
Mm Hs GPC4 0.01 NA NA 0.008 0.011 1 Basophils Mesoderm Immune system K-glypican glypican 4 flag
0
Mm Hs FADS2 0.008 NA NA 0.021 0.004 1 Basophils Mesoderm Immune system FADSD6,D6D,TU13,DES6,SLL0262,LLCDL2 fatty acid desaturase 2 flag
0
Mm Hs DNASE2B 0.001 NA NA 0.001 0.001 1 Basophils Mesoderm Immune system DLAD deoxyribonuclease 2 beta flag
0
Mm MRGPRA6 0 NA NA NA NA 1 Basophils Mesoderm Immune system MAS-related GPR, member A6 flag
0
Mm Hs IGFBP7 0.172 NA 0.2 0.239 0.163 3 Basophils Mesoderm Immune system MAC25,IGFBP-7,FSTL2 insulin like growth factor binding protein 7 Yflag
0
Mm Hs HTR1B 0.002 NA 0.067 NA 0.002 1 Basophils Mesoderm Immune system 5-HT1B,HTR1D2,5-HT1DB 5-hydroxytryptamine receptor 1B flag
0
Mm Hs CDH1 0.056 NA 0.2 0.042 0.057 15 Basophils Mesoderm Immune system uvomorulin,CD324,UVO cadherin 1 Yflag
0
Mm Hs CD44 0.127 NA 0.133 0.3 0.088 9 Basophils Mesoderm Immune system IN,MC56,Pgp1,CD44R,HCELL,CSPG8,MIC4,MDU2,MDU3 CD44 molecule (Indian blood group) Yflag

Datasets with computationally identified Basophils

SRA SRS tissue cluster cell type p-value FDR View
SRA834897 SRS4252175 Macrophage from E14.5 31 Basophils 1.72E-10 7.21E-8 view data
SRA797768 SRS3969076 Bone marrow mesenchymal and endothelial cells 5 Basophils 4.47E-7 1.55E-4 view data
SRA797768 SRS4351136 Bone marrow mesenchymal and endothelial cells 4 Basophils 1.06E-11 6.98E-9 view data
SRA797768 SRS4351136 Bone marrow mesenchymal and endothelial cells 11 Basophils 3.22E-9 1.42E-6 view data
SRA653146 SRS3044261 Lung 14 Basophils 1.16E-8 1.91E-6 view data
SRA834897 SRS4252176 Bone marrow 18 Basophils 1.75E-7 4.39E-5 view data
SRA653146 SRS3044246 Marrow 16 Basophils 1.60E-9 3.90E-7 view data
SRA585365 SRS2345687 Pancreas 29 Basophils 5.81E-11 7.72E-8 view data
SRA653146 SRS3044247 Marrow 15 Basophils 3.71E-12 9.79E-10 view data
SRA866994 SRS4545958 Dura mater 25 Basophils 1.99E-12 5.94E-10 view data
SRA585365 SRS3297651 Pancreas 28 Basophils 1.00E-10 6.34E-8 view data
SRA653146 SRS2874278 Bone marrow 16 Basophils 4.56E-22 2.21E-19 view data
SRA638923 SRS2960038 Pancreas 11 Basophils 4.90E-5 8.47E-3 view data
SRA839328 SRS4292911 Sorted myeloid cells 14 Basophils 3.11E-9 2.47E-6 view data
SRA611634 SRS2532209 Lung 13 Basophils 5.55E-8 2.93E-5 view data