Cell type gene expression markers


This is a list of gene expression markers are used to define cell types. Green rows indicate canonical markers (classical markers used to define the cell type).

Summary: 8286 associations (178 cell types, 4679 gene symbols, 29 tissues); Last updated: 27/03/2020 10:44:00 CET

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Description: Bergmann glia are located in the cerebellum in which they can be seen very early in development, and play an essential role in the migration of the cerebellar Purkinje cells and granule cells. Bergmann glia are characterized by multiple radial branches, as opposed to a single process in other radial glia in other brain areas, that spans the width of the cerebellar cortex. Since Bergmann glia appear to persist in the cerebellum, and perform many of the roles characteristic of astrocytes, they have also been

Gene expression markers for Bergmann glia

Vote(s) Species Official gene symbol UI Sensitivity (human) Sensitivity (mouse) Specificity (human) Specificity (mouse) Marker count Cell type Germ layer Organ Aliases Product description Disease Action
2
Mm Hs TTC21B 0.001 NA NA NA NA 1 Bergmann glia Ectoderm Brain FLJ11457,JBTS11,NPHP12,IFT139B,THM1 tetratricopeptide repeat domain 21B Yflag
1
Mm Hs HEPACAM 0.033 NA 0.667 NA 0.041 2 Bergmann glia Ectoderm Brain FLJ25530,hepaCAM,GLIALCAM hepatic and glial cell adhesion molecule Yflag
0
Mm Hs P2RX7 0.004 NA NA 0.009 0.003 8 Bergmann glia Ectoderm Brain P2X7,MGC20089 purinergic receptor P2X 7 flag
0
Mm Hs FABP7 0.142 NA 1 0.014 0.174 2 Bergmann glia Ectoderm Brain B-FABP,BLBP fatty acid binding protein 7 flag
0
Mm Hs ZEB2 0.144 NA NA 0.085 NA 2 Bergmann glia Ectoderm Brain KIAA0569,ZFHX1B zinc finger E-box binding homeobox 2 Yflag
0
Mm Hs UFL1 0.003 NA NA NA NA 1 Bergmann glia Ectoderm Brain NLBP,Maxer,RCAD,KIAA0776 UFM1 specific ligase 1 flag
0
Mm Hs NRXN3 0.093 NA NA 0.008 0.115 1 Bergmann glia Ectoderm Brain KIAA0743,C14orf60 neurexin 3 flag
0
Mm Hs ATP7A 0.001 NA NA NA 0.002 1 Bergmann glia Ectoderm Brain MNK ATPase copper transporting alpha Yflag
0
Mm Hs BICD2 0.014 NA NA 0.009 0.016 1 Bergmann glia Ectoderm Brain KIAA0699 BICD cargo adaptor 2 Yflag
0
Mm Hs GJA1 0.1 NA 1 0.063 0.107 4 Bergmann glia Ectoderm Brain CX43,ODOD,SDTY3,ODDD,GJAL gap junction protein alpha 1 Yflag
0
Mm Hs METRN 0.015 NA NA 0.055 0 2 Bergmann glia Ectoderm Brain MGC2601,C16orf23 meteorin, glial cell differentiation regulator flag
0
Mm Hs VIM 0.427 NA NA 0.591 NA 5 Bergmann glia Ectoderm Brain vimentin Yflag
0
Mm Hs EGFR 0.014 NA NA 0.022 0.013 8 Bergmann glia Ectoderm Brain ERBB1,ERBB epidermal growth factor receptor Yflag
0
Mm Hs GRIA1 0.056 NA 1 0.002 0.069 1 Bergmann glia Ectoderm Brain GluA1,GLURA,GLUR1 glutamate ionotropic receptor AMPA type subunit 1 flag
0
Mm Hs P2RY1 0.003 NA NA 0.002 0.003 3 Bergmann glia Ectoderm Brain P2Y1,SARCC purinergic receptor P2Y1 flag
0
Mm Hs GRIN2B 0.076 NA NA 0.005 0.095 2 Bergmann glia Ectoderm Brain GluN2B,NMDAR2B glutamate ionotropic receptor NMDA type subunit 2B Yflag
0
Mm Hs GRIN3A 0.006 NA NA NA 0.008 1 Bergmann glia Ectoderm Brain GluN3A glutamate ionotropic receptor NMDA type subunit 3A flag
0
Mm Hs SEPT4 0.081 NA NA 0.017 NA 1 Bergmann glia Ectoderm Brain CE5B3,hucep-7,ARTS,hCDCREL-2,MART,PNUTL2 septin 4 flag
0
Mm Hs DAO 0.001 NA NA NA 0.001 1 Bergmann glia Ectoderm Brain DAMOX,DAAO D-amino acid oxidase Yflag
0
Mm Hs ITGB1 0.276 NA NA 0.169 0.302 4 Bergmann glia Ectoderm Brain CD29,GPIIA,FNRB,MSK12,MDF2 integrin subunit beta 1 flag
0
Mm Hs KIF1BP 0.023 NA NA 0.007 0.028 2 Bergmann glia Ectoderm Brain DKFZP586B0923,TTC20,KBP,KIAA1279 KIF1 binding protein Yflag
0
Mm Hs BTBD17 0.022 NA 1 0.001 0.027 1 Bergmann glia Ectoderm Brain LGALS3BPL,BTBD17A,TANGO10A BTB domain containing 17 flag
0
Mm Hs GDF10 0.005 NA 1 0 0.006 3 Bergmann glia Ectoderm Brain BMP-3b growth differentiation factor 10 flag
0
Mm Hs GJB6 0.013 NA NA 0 0.016 2 Bergmann glia Ectoderm Brain EDH,CX30,ED2 gap junction protein beta 6 Yflag
0
Mm Hs GRIA4 0.014 NA 1 0.003 0.016 3 Bergmann glia Ectoderm Brain GluA4,GLURD,GLUR4 glutamate ionotropic receptor AMPA type subunit 4 flag
0
Mm Hs GRM3 0.002 NA NA 0.004 0.002 1 Bergmann glia Ectoderm Brain GPRC1C,mGlu3,MGLUR3 glutamate metabotropic receptor 3 flag
0
Mm Hs NTSR2 0.019 NA 0.333 NA 0.024 2 Bergmann glia Ectoderm Brain NTR2 neurotensin receptor 2 flag
0
Mm Hs ITIH3 0.009 NA 0.667 0.003 0.011 2 Bergmann glia Ectoderm Brain H3P inter-alpha-trypsin inhibitor heavy chain 3 flag
0
Mm Hs A2M 0.012 NA 0.333 0.062 0.002 1 Bergmann glia Ectoderm Brain FWP007,S863-7,CPAMD5 alpha-2-macroglobulin Yflag
0
Mm Hs PTCH1 0.012 NA 1 0.019 0.011 4 Bergmann glia Ectoderm Brain BCNS,NBCCS,PTCH patched 1 Yflag
0
Mm Hs CDC42EP4 0.027 NA 1 0.018 0.03 1 Bergmann glia Ectoderm Brain KAIA1777,BORG4,MGC3740,MGC17125 CDC42 effector protein 4 flag
0
Mm Hs GFAP 0.013 NA NA 0.006 0.015 11 Bergmann glia Ectoderm Brain FLJ45472 glial fibrillary acidic protein Yflag
0
Mm Hs AQP4 0.024 NA 1 0.006 0.029 9 Bergmann glia Ectoderm Brain MIWC aquaporin 4 flag
0
Mm Hs SLC4A4 0.033 NA NA 0.012 NA 4 Bergmann glia Ectoderm Brain NBC1,HNBC1,NBC2,pNBC,hhNMC,SLC4A5 solute carrier family 4 member 4 Yflag
0
Mm Hs HOPX 0.033 NA 1 0.092 0.022 10 Bergmann glia Ectoderm Brain LAGY,OB1,NECC1,SMAP31 HOP homeobox flag
0
Mm Hs GPR37L1 0.041 NA 1 0.004 0.051 5 Bergmann glia Ectoderm Brain ETBR-LP-2 G protein-coupled receptor 37 like 1 flag
0
Mm Hs ACSBG1 0.023 NA 1 NA 0.028 3 Bergmann glia Ectoderm Brain BGM,FLJ30320,MGC14352,BG1,KIAA0631,hBG1,hsBG acyl-CoA synthetase bubblegum family member 1 flag
0
Mm Hs ALDH1L1 0.008 NA NA 0.002 0.01 2 Bergmann glia Ectoderm Brain 10-fTHF,FTHFD aldehyde dehydrogenase 1 family member L1 flag
0
Mm Hs SLC1A3 0.074 NA NA 0.011 NA 6 Bergmann glia Ectoderm Brain EAAT1,GLAST,EA6 solute carrier family 1 member 3 Yflag
0
Mm Hs SLC1A2 0.071 NA NA 0.011 NA 3 Bergmann glia Ectoderm Brain GLT-1,EAAT2 solute carrier family 1 member 2 flag
0
Mm Hs S100B 0.066 NA NA 0.033 NA 8 Bergmann glia Ectoderm Brain S100beta S100 calcium binding protein B flag

Datasets with computationally identified Bergmann glia

SRA SRS tissue cluster cell type p-value FDR View
SRA667466 SRS3059959 Cerebellum 1 Bergmann glia 7.84E-18 6.82E-15 view data
SRA667466 SRS3059983 Cerebellum 1 Bergmann glia 1.46E-13 1.14E-10 view data
SRA667466 SRS3059982 Cerebellum 1 Bergmann glia 2.35E-15 2.44E-12 view data