SRA | SRA822763 |
SRS | SRS4137616 |
SRR | SRR8310803 |
Species | Mus musculus |
Sample (strain, genotype, etc.) | |
Tumor | |
Protocol | 10x chromium |
Instrument | Illumina HiSeq 4000 |
Full-length mRNA-seq | No |
Number of cells | 3,135 |
Number of exp. genes | 20,134 (median number of expressed genes per cell=954) |
Number of clusters | 11 |
Tissue | Aorta |
Cell line (Y/N) | No |
Primary adult tissue (Y/N) | Yes |
Target cell population | |
Metadata (raw) | source_name=Mouse aorta|strain=C57BL/6|tissue=aorta|cell type=monocytes and macrophages|genotype=Cx3cr1CreERT2-IRES-YFP/+Rose26floxed-tdTomato/+|age=28 weeks|condition=severe atherosclerosis|;GSM3507490: Total TdTomato+CD11b+Dump- cells from progression group; Mus musculus; RNA-Seq |
Gene search |
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Download |
Read counts: [ R data ] or [ Compressed plain text matrix ]
Clustering results: [ Plain text file ] |
Putative cell types | Alveolar macrophages, Macrophages, Unknown list all |